EMLSAT00000005273, EMLSAT00000005273-701120 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005273
Unique NameEMLSAT00000005273-701120
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AC F231 EMLSAG00000005273 female
  1. Adult
  2. Adult
 -Missing-
-Missing- 		14.12.2015 - 11:21
25.01.2016 - 10:22
AF F231 EMLSAG00000005273 female
  1. padII/ad
  2. Adult
 -Missing-
-Missing- 		16.01.2017 - 11:21
22.02.2017 - 10:22
F231 Nauplia EMLSAG00000005273 Both
  1. Nauplius I
  2. chalamus II/padI
 -Missing-
-Missing- 		01.02.2017 - 11:21
13.02.2017 - 10:22
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s281supercontigLSalAtl2s281:475..977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005273 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005273EMLSAG00000005273-688039Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000023049EMLSAE00000023049-731977Lepeophtheirus salmonisexon
EMLSAE00000023050EMLSAE00000023050-731978Lepeophtheirus salmonisexon
EMLSAE00000023051EMLSAE00000023051-731979Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto767982auto767982Lepeophtheirus salmonispolypeptide
polypeptide-auto767984auto767984Lepeophtheirus salmonispolypeptide
EMLSAP00000005273EMLSAP00000005273Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005273

>EMLSAP00000005273 ID=EMLSAP00000005273|Name=EMLSAP00000005273|organism=Lepeophtheirus salmonis|type=polypeptide|length=126bp
MNSKYLYPVGSNPSEMEIVYLEKIGAYAIFGQANGIMEQSGKYFRWPIRR
YFTNPMPKKSTRLGDMKLKGEVDGDKLHINVSDPNSRKEVLTITLWAQEV
RRAKGLTLTYKNPKTGTTAQTYYTDI
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mRNA from alignment at LSalAtl2s281:475..977-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005273-701120 ID=EMLSAT00000005273-701120|Name=EMLSAT00000005273|organism=Lepeophtheirus salmonis|type=mRNA|length=503bp|location=Sequence derived from alignment at LSalAtl2s281:475..977- (Lepeophtheirus salmonis)
ATGAACTCNAAATATTTATATCCAGTGGGCTCCAATCCTAGTGAAATGGA
GATTGTTTACTTAGAAAAAATTGGAGCATATGCAATCTTTGGACAAGGTA
ATATTATTTTTCTTTTACAAACATGCATATTTAATCCTTTAAACTCCCTT
CACATTCAGCCAACGGAATTATGGGTAAGTCTTGCTAAAAAATATTCAGA
TATGACCAAATGTTATATTAATTAAATATTTTAGAACAATCGGGCAAATA
TTTTAGATGGCCAATTCGCAGATATTTCACAAATCCAATGCCAAAAAAGA
GTACCCGTTTAGGTGATATGAAACTGAAGGGAGAAGTTGATGGTGATAAG
CTCCATATTAATGTCAGTGATCCAAATTCCAGAAAAGAAGTATTGACCAT
CACACTATGGGCACAAGAAGTTAGACGTGCCAAGGGATTAACTCTTACGT
ACAAAAATCCTAAAACCGGAACAACAGCCCAAACTTATTACACAGATATC
TAA
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