EMLSAG00000005273, EMLSAG00000005273-688039 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005273
Unique NameEMLSAG00000005273-688039
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000005273 vs. L. salmonis peptides
Match: EMLSAP00000005273 (pep:novel supercontig:LSalAtl2s:LSalAtl2s281:475:977:-1 gene:EMLSAG00000005273 transcript:EMLSAT00000005273 description:"augustus_masked-LSalAtl2s281-processed-gene-0.0")

HSP 1 Score: 262.307 bits (669), Expect = 4.334e-91
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 
Query:    1 MNSKYLYPVGSNPSEMEIVYLEKIGAYAIFGQANGIMEQSGKYFRWPIRRYFTNPMPKKSTRLGDMKLKGEVDGDKLHINVSDPNSRKEVLTITLWAQEVRRAKGLTLTYKNPKTGTTAQTYYTDI 126
            MNSKYLYPVGSNPSEMEIVYLEKIGAYAIFGQANGIMEQSGKYFRWPIRRYFTNPMPKKSTRLGDMKLKGEVDGDKLHINVSDPNSRKEVLTITLWAQEVRRAKGLTLTYKNPKTGTTAQTYYTDI
Sbjct:    1 MNSKYLYPVGSNPSEMEIVYLEKIGAYAIFGQANGIMEQSGKYFRWPIRRYFTNPMPKKSTRLGDMKLKGEVDGDKLHINVSDPNSRKEVLTITLWAQEVRRAKGLTLTYKNPKTGTTAQTYYTDI 126
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005273 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005273 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005273 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000052734.334e-91100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s281:475:9... [more]
back to top
BLAST of EMLSAG00000005273 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005273 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005273 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005273 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s281supercontigLSalAtl2s281:475..977 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s281-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005273 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005273EMLSAT00000005273-701120Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s281:475..977-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005273-688039 ID=EMLSAG00000005273-688039|Name=EMLSAG00000005273|organism=Lepeophtheirus salmonis|type=gene|length=503bp|location=Sequence derived from alignment at LSalAtl2s281:475..977- (Lepeophtheirus salmonis)
ATGAACTCNAAATATTTATATCCAGTGGGCTCCAATCCTAGTGAAATGGA
GATTGTTTACTTAGAAAAAATTGGAGCATATGCAATCTTTGGACAAGGTA
ATATTATTTTTCTTTTACAAACATGCATATTTAATCCTTTAAACTCCCTT
CACATTCAGCCAACGGAATTATGGGTAAGTCTTGCTAAAAAATATTCAGA
TATGACCAAATGTTATATTAATTAAATATTTTAGAACAATCGGGCAAATA
TTTTAGATGGCCAATTCGCAGATATTTCACAAATCCAATGCCAAAAAAGA
GTACCCGTTTAGGTGATATGAAACTGAAGGGAGAAGTTGATGGTGATAAG
CTCCATATTAATGTCAGTGATCCAAATTCCAGAAAAGAAGTATTGACCAT
CACACTATGGGCACAAGAAGTTAGACGTGCCAAGGGATTAACTCTTACGT
ACAAAAATCCTAAAACCGGAACAACAGCCCAAACTTATTACACAGATATC
TAA
back to top
Add to Basket