EMLSAT00000005522, EMLSAT00000005522-701369 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005522
Unique NameEMLSAT00000005522-701369
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAF F170 LsDcytB unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		16.06.2014 - 00:00
23.06.2014 - 00:00
NAG F170 LsDcytB unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		19.06.2014 - 00:00
27.06.2014 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s297supercontigLSalAtl2s297:299874..300575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005522 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005522EMLSAG00000005522-688288Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000024143EMLSAE00000024143-733071Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto776065auto776065Lepeophtheirus salmonispolypeptide
EMLSAP00000005522EMLSAP00000005522Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005522

>EMLSAP00000005522 ID=EMLSAP00000005522|Name=EMLSAP00000005522|organism=Lepeophtheirus salmonis|type=polypeptide|length=233bp
MVVHLLCVLLTGFYIYLSPPGTDLFSWHPACMIIAFGLLSLQAILIFSPI
SSLTPNSPRGDKVQLHWIFQCFGLFALIAGFTSVFLNKEINSRKHFTTWH
GRFGLATLIGFITIFIGGVVANYSINFRSYIKPVKLKMYHATSGMIVFFF
AMSTLYLATYSNYFSNRVKTAWIARGAGFAPIILGICIARQVTQSYLPRI
LTPRESEIDSKNKRVEEKIKNKLEKKTVSQRGL
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mRNA from alignment at LSalAtl2s297:299874..300575-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005522-701369 ID=EMLSAT00000005522-701369|Name=EMLSAT00000005522|organism=Lepeophtheirus salmonis|type=mRNA|length=702bp|location=Sequence derived from alignment at LSalAtl2s297:299874..300575- (Lepeophtheirus salmonis)
ATGGTTGTACATCTCCTCTGCGTACTTCTCACGGGTTTCTACATTTATCT
ATCACCTCCAGGAACGGATTTATTTTCCTGGCATCCTGCTTGTATGATTA
TTGCCTTCGGACTCTTATCACTCCAGGCCATACTCATATTTTCCCCGATT
TCTTCCCTCACTCCCAATTCACCCAGAGGAGATAAAGTTCAACTGCATTG
GATATTTCAGTGTTTTGGGCTCTTTGCACTCATTGCAGGGTTTACCTCTG
TTTTCCTTAACAAGGAAATCAATTCCCGTAAACACTTTACGACATGGCAT
GGAAGATTTGGACTTGCGACACTAATAGGATTCATCACTATCTTTATTGG
AGGGGTAGTAGCTAACTATTCCATCAACTTTAGATCTTACATCAAGCCAG
TCAAATTAAAGATGTATCATGCCACCAGTGGAATGATTGTCTTCTTCTTC
GCCATGAGTACGCTCTATTTAGCTACCTACTCCAATTATTTTTCAAATAG
AGTTAAGACAGCTTGGATCGCCAGGGGTGCAGGATTTGCTCCAATTATTC
TTGGAATTTGCATTGCAAGGCAAGTGACTCAGTCTTATTTGCCGCGGATC
CTTACACCCAGAGAAAGTGAAATTGACTCTAAGAACAAGCGTGTGGAAGA
AAAAATTAAAAACAAATTAGAAAAGAAGACTGTCAGTCAAAGGGGATTAT
AA
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