EMLSAT00000005974, EMLSAT00000005974-701821 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005974
Unique NameEMLSAT00000005974-701821
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s322supercontigLSalAtl2s322:1175..2268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005974 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005974EMLSAG00000005974-688740Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000026057EMLSAE00000026057-734985Lepeophtheirus salmonisexon
EMLSAE00000026058EMLSAE00000026058-734986Lepeophtheirus salmonisexon
EMLSAE00000026059EMLSAE00000026059-734987Lepeophtheirus salmonisexon
EMLSAE00000026060EMLSAE00000026060-734988Lepeophtheirus salmonisexon
EMLSAE00000026061EMLSAE00000026061-734989Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto768137auto768137Lepeophtheirus salmonispolypeptide
EMLSAP00000005974EMLSAP00000005974Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005974

>EMLSAP00000005974 ID=EMLSAP00000005974|Name=EMLSAP00000005974|organism=Lepeophtheirus salmonis|type=polypeptide|length=137bp
MHVYCLXXQWMCPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSC
ASCDDCEDLINSDLCSGYKHRCGEDTSVQYACRKTCGLCDDSCNDASVHE
SLCYKFENNGYCEKSNTMDFMNRACRRTCGFCFLETC
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mRNA from alignment at LSalAtl2s322:1175..2268+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005974-701821 ID=EMLSAT00000005974-701821|Name=EMLSAT00000005974|organism=Lepeophtheirus salmonis|type=mRNA|length=1094bp|location=Sequence derived from alignment at LSalAtl2s322:1175..2268+ (Lepeophtheirus salmonis)
TTTTCTTGGCTGTATGGGCCTGTAATTGAATTTTGATGATGAAAACAATC
CGGCTGGAGATCCCAACTGTCTTTGCAGACTTCTCGGTACTGACACACAC
TTGTGCGGAAGACAAGAATAAGTCATGCTTCTTATGAAATTTTAAAAATT
AGAATTTTCATTAGATTGTTTTCGTCTTCAAGCATGTCTACTCTTTATCT
TACTCTTCTCTTTCTTCTTTGTTGGGCTTTCAATGCCATGGGACGCATCT
CGGGTATGGTATAAACTTTGTGTCTCCTTTCTTTTGAGTGTTTAAATAAC
TTTTTTTTTTTTAGAATTCGAGTGTAGGGACAGTCACTATGATTGTCCTT
TACTAGTTTCAACGACGTCAGATGCATGTCTATTGCCTANNNNATCAATG
GATGTGCCCAGAACAATGTGGTGTTTGTCAAGGTTCGGCAAAAATCAAAA
TATTATTATAATAATCAAGCAAAATGATCCATTCATTAAATTATTTTTAG
CAAGTTGCAGAGACACAGGTGCTTCGTGCCTTGAACACTCAGAGTCTTGT
CTACAAAAAAGTATAGAAAAGCAATGTCCAAAAAGTTGTGCTTCTTGTGA
TGGTTTGAATTAAGATATTAATACATGATTAATATATATAAGTAAATTGT
GTTTTTTTTAGATTGTGAGGATTTGATTAATTCAGACTTATGCAGTGGGT
ACAAACATCGGTGTGGTGAAGATACTAGTGTTCAATATGCGTGTAGAAAA
ACATGCGGACTTTGTGGTGAGTTAAAAAATTTACATATATTTTTCCTTTT
GATATTTTTTTATTCTAATAAAATAGATGATAGTTGCAATGATGCCAGCG
TTCATGAAAGCTTATGTTATAAATTTGAAAACAATGGATATTGCGAAAAA
AGTAATACGATGGATTTTATGAATAGGGCTTGTCGACGAACGTGTGGATT
CTGTTTTCTTGAAACGTGCTAGGTGTAACAAATAATAACATTGTATCATA
ATTCAAAATCTAATAAATACACAATATTTTAGAAATCAGATAAATCATCT
ACAATTAAAAGAAATGATTTAAAAAACTTATTTCATTCAAATTT
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