EMLSAT00000006465, EMLSAT00000006465-702312 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000006465
Unique Name	EMLSAT00000006465-702312
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	K F81	Etif_g1565	female Adult Adult	-Missing- female reproduction	03.04.2013 - 10:46 13.05.2013 - 00:00

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s353	supercontig	LSalAtl2s353:325573..330949 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000006465 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000006465	EMLSAG00000006465-689231	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000028238	EMLSAE00000028238-737166	Lepeophtheirus salmonis	exon
EMLSAE00000028239	EMLSAE00000028239-737167	Lepeophtheirus salmonis	exon
EMLSAE00000028240	EMLSAE00000028240-737168	Lepeophtheirus salmonis	exon
EMLSAE00000028241	EMLSAE00000028241-737169	Lepeophtheirus salmonis	exon
EMLSAE00000028242	EMLSAE00000028242-737170	Lepeophtheirus salmonis	exon
EMLSAE00000028243	EMLSAE00000028243-737171	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto776460	auto776460	Lepeophtheirus salmonis	polypeptide
EMLSAP00000006465	EMLSAP00000006465	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s353:325573..330949+

protein sequence of EMLSAP00000006465

>EMLSAP00000006465 ID=EMLSAP00000006465|Name=EMLSAP00000006465|organism=Lepeophtheirus salmonis|type=polypeptide|length=248bp
MSGGNSSNSGAGNKYYQQSLSRASSTGSLHAGVDNATDXEDSDSKSNLSY
RERRREAHTQAEQKRRDAIKKGYDFLQDLVPTCPTAQESVGGGTGSSSGG
GYKVSKAIVLQKSIEYIQHVQGQKKVQEDELASLRKEVVALQIMRKNYEA
LAKAHKSQPSSSSLFLKDTALLPGEVKFQVFQLLMDSLFQSFNDSVNMKN
FSELSGCVFSWLZEQXKPQLLQELXQQLLCRVHEEHQIKKDEKKLYDN

mRNA from alignment at LSalAtl2s353:325573..330949+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000006465-702312 ID=EMLSAT00000006465-702312|Name=EMLSAT00000006465|organism=Lepeophtheirus salmonis|type=mRNA|length=5377bp|location=Sequence derived from alignment at LSalAtl2s353:325573..330949+ (Lepeophtheirus salmonis)
CAACTTACATAAACATTCTTTTTGAATTTTAAGTCTTTATTTCTTATCAA
GAGAATTAAAGAATCCATAGCCTAATGGTATGTCTGTATTTTCAATTTTC
TATAATTAAATTAAAAATGGTCATTTTGAAAAAATCAAATTTATAATTTG
CAAAGTAATGAAGGTCCAAATGTAAAATGATGATGTCCTACTTATTTGAT
TGGTTAAGGATATCATCCAGTTAGGATTAAAGAAGTACTTAAAAAACTAG
GATCCTTAAAAGAAATTCGCCATTTTATTGTGACAGGGATTGAGTGAGAA
GAAGGAGGTGGTGATCTAAAGCAAAGGTAAGTCCTTAAGACTCTTCTTCT
TTGTTGATATAGAATCTCAGTATCTGAATGGGTGTTTTGTGTTTCTCTCT
CCCGAAATCATAGAACTCGTTCTACAGGTTTTTTGTTGTATACTTGAATA
TTATAAATTAAAACTAAGATGAAGTTGTCGGCGTTTGAGTGAATTGGAGA
GAGAGTTTCTTATGCTGTTGCTTCCTACTTGCTCTCCCTCGTCTCTCTCA
TGTCTCTCCCATCTCCACATTTGAAATTACAATTAGTTCTTTGTTCCTTA
GTGGGTCGAGAGAATGAAGCTGGAGTATTCGAGGGGAGTAATGAGGAAAG
GATCTGCTCAAGCAGCCATGAGTTGGATGTCGAACGAAGGTGAAGGGCTC
TTTGAGGAGGAAAGCTGTTCCTGGGACTGTTCGCATGTATTAGCAGAGTC
TCCTTTTCCACTGCTTTGCTTAGCGCAGGCTTTAGGTAGAGTTGATTGTT
GTCCGTCTCATTGACTTTTGTCGTCATTTGATGTGTTGATTTTATAGAGA
GGAATGCGGCGTTTTTCCAGTCCTTGTGCGAGTTGGATAATCGAAGATTA
GATGTGGATGGACTGATTGAATGGATTTATGAGTGTGCACTCCGTATGGG
AGATGAATGGACTTTTCAAGGCCCTGTGGTAATGATGGGAGATGTGTTTT
TTAACCGTAGCATTGAAGCCTTGGCTGCCGGGCACCCTGTTATCTTTTTA
ACACACAAAAAGGATTCTCTTGCTGCCTTTTTTAAAAAGTTGACGAATGA
AGCAAAATTTAAAAAGGGCTCGTTTGAAATCCCTCTCTGGGAGGGGGGCT
CTTTATCCACTCTCCCAGACTATTTAAAGGGAGTACCCATTTTGTATGAA
TGGGACTCTTTTTACTCTCCGAGTGACGAGGTGAAATGGCTCSTCMGCTC
MAGKGGRTCATTTTTKCCATCCMTTCGAAAGGGKATGATTTCTCTCTAGT
ACCATTCAAGAGTCTCCACATTCTTGCTTTTATATATTTATAGGTGGGAG
TCCTGCTATAATTCTGGACTCTGCTGATTTGGATTCAGTAATTGAGTCTA
TTATTACTTCCATTAAGAGCTACAACGGGTATTCGGTTTTTAGAATTCCA
CGCTTGTTTATCCAAGAGTCTATTTTCCASATATTTCTTGAAAAAATGAA
TGGAAGAATGAAAAAATTTGTAATTGGAAGTCATAATAGCGAACTTGGAG
TAGATGGCATTATCACCAAAGAAACTATACGAAATCTTTCTGAATTACTC
AAAACTGAAGGTGTTGAAGCGTATTCATCCAAAGATATTGCTCCACTCAT
TCTCACTTCATTTCCAACTAACATTGATCCTAATGTTGGTCTTATCTTCA
TGGCAACTCCATTTAGAACGTCTAAAGAGTTATTGTCTCTTTTTATGAGT
TATTATGGAGAAGAAGCCTTCGTCTTCTCTGAAAACTTTTCACAGAGCAT
GGAAATCGTTCATAAACTTGACTTTGAGACTGTCCACATTAATAACGTAG
ACGAGTCCTTTATATATCGTATGAAAGGTAGAATTCCTAAACAGCTTCAG
AGGAATGATCATTTTAATAAACAAGATATTGATAATCATTTTCAACAAGT
CATTCCATATTCTGTCGATAAGTCATACATTTGTGCACTTAAGGCTAGTG
GTGCTTGGTTCAAGACTAAAAGAGTCCGCTATATTTACAATGCCCTTAAT
TTCTGTAATATGTATTCTAACGAGCTCGCTAAATGGGTTATGCCTGACAA
TTTAGACTGCGGATCAGGCAGAGGAGATAAACATATTTTGGATATAAAGG
ATCCAGCTGGAGTTGTAGGCTTCATTTTAGAAGATGGAGAATGTTTGTCT
AAGTGGATGCCACTTATTGTTTGTGCTTTGTCCTGTGGAAATGTCATCTT
GTTGACTCTTAGATCTAAAAATGAGACTCTGTCTAATTTCTCTGAGAAAT
TGGGCGAAGGAGTTCTCAGTATAATTATAAATGAAGATGTAGAGTCAGTT
GCGTCGGGTTTCATTCAAAGGAGGGRTTTGGGACTTATTGTTTATACTGG
KGTGTCTAAAAAAGTTTCTCTTTATTTACGTTATAAAGCAAATTGTGGAG
TTTGGAATCCAAGGAATAACGACTTCTCTAGGAGTGAAGCTCATCAATGG
TTCAATAAGACTAAGAAAATCAACATGTCTTTCGAAACTATTTATGCTAA
TTAGTTTTTGTTCCGTATAGTCCAGTAATAAAGATTAAATAATTATGATT
ATATACTGGTTTTATTTATTCCAAACTAATGTAGTTTCTCATTTTTAAAG
AAGTCTATCTAAAATTTGATTGAGCTATAATATCTTTCTAATCTATGTAC
TTATGCATCATTCGTAGTATATATTTATGAATAATAATGAATCATTTATA
GGTAAATATTGAATAAAGTTTATCTTCAGAAAAAGATGAAAACAAGTCGA
AAGCAATACGAAACTCGTAGTCGAAAATATTCGGCTGAAAGCACCTCACC
TTATTCTAGTGCCTCCGTATCTCCCGCTGATAGTCCTACCGACTTTGAAA
TCAAGCATCCGTTAGAACATGAATGGACTCTTTGGTATTATAATCATGAT
CCACAAAATGCATGGGAAGACAATCTCAAAGAGGTTAAATTTTTATTTTA
TTTTGAAAAATTAGTTCCTGAGTAAATAATTATGAGACAAACAACAATAC
TGATGTAGGTATATAATTTTATACCTACGTCTACTTATGAAAGATTACTT
AACTACTTAAAATAGGTTAAGTATTACATTATAGAAGTTATACGACTACT
CTATTTACTTTTTTTTACCTAAAACTTTATTTTATTTTACTATAGGTAAT
TTCATTCAATACTGTGGAAGATTTTTGGGCCATATATAATCATATCGAGT
TAGCCTCCGAGATAAGTGATAAATGTGACTATTGTCTCTTTAAAAAGGGA
GTAAAACCCATGTGGGAAGACGCTTCTAATTGTAATGGAGGACGCTGGGT
TTATAGTACTCCTGTAAATAGAAGAAAATCATTTGACGGAGGTTAGTAGA
TACTGATAGTCGTTTAATTTGATTTTACGTTCAGTTGGTTTGTTAATCAA
TATCTTGTACTCAGGACTAGATGTGAATTGGCTAGAAGTGATGATGTCTT
TAATAGGTGAAGCTTTTGAAGGGKCTGGTGATTTGATTAATGGTGCTGTT
GTTAGTCTTCGTAATAAATCAGATAAAATATCAATTTGGTTGGGTACAGC
GTATGACGAGGATGACGGCATCCGAAGAATTGGAGCGATTCTCAAGAAAA
GACTTGGGCTTAGAAGAGACGAACAACTTTCATTTGAAGTTCATCGTGAT
AATCAAAANCGCATTAACTCCACCGCTATTCGTCCTAAGTATCAAGTGTA
GTCATAGTCTATTTATTTTAATTTTATTTAATACCTAGAAACATAACTGC
ATATAATTTCTTTTCCCAACAACGTTATTTATCATAAATTAATGTGTGCA
GATTTATTGTTCAAACATTATTTATATATCATATAAAGAACAAAAAATAA
AATTGTTGAGTTATCTATGTTGAAGCATAAATATATATAATGGCTGKTAT
GAAAAATTTCAATGCATTTGTCTTTTTCCCTGCTCTTATGTGTTTCTCAT
CACTTTTTGTATTTTTAACTTAAAAAAGTATGTATTACATCGATATATTT
CCCATTATTGAGTTAGGGCACGTAGAGAGGGAGAAATAATATTATTGCAA
TCTTTTAAAACAGTATTACTTCGTTATCACTTATAATTATATAGCTAATC
GAACACGCATACATTATTAGCTAGACACTTTATTACTATGTATTATTTCA
ATAACACCATCAAGCTGTTGATACGTACGTATACATTTGGACTTTATCTA
CATAAACAAGCTATGCATAGTTTTTCTTTTAACCGTACGCGTTGGAAAAT
AATGTCTGTTCATATAATCTGATAGTAAGACAGTATAGACATCATACATA
CACCTTGTTTATTTCGTTCTCCTTAAGGGGACGCAAATAATGATCATAGC
GTAATATTAATATCTATAACCATCAAGATCATCCATATCCTAGTCTATAT
AGTGTAATACGGAATAGCCAGATAAATTTATACACAATAAAAAAACAATG
TCTGGAGGAAATAGTTCAAATAGTGGAGCAGGGAACAAATATTATCAGCA
GTCACTCTCTAGAGCGAGTTCGACAGGATCTCTACACGCTGGAGTTGACA
ATGCTACGGATGRCGAAGACTCTGACTCCAAGTCCAATTTGTCATATCGA
GAAAGAAGAAGAGAGGCACATACTCAGGCTGAACAGAAGAGAAGAGACGC
AATTAAAAAAGGATACGACTTTTTGCAGGACCTAGTACCTACATGTCCAA
CTGCACAGGAATCTGTTGGTGGTGGAACAGGTTCAAGTAGTGGGGGAGGG
TGAGTTGTATCATATTTTCAACTTTAATTCATTTCTGCTTCTATCAAATT
ATAGATTATAATATTATTAATAATTATCTTACGTCTTTTGTATTATTATA
TTTTAAGATCAATATTTGTATTATTTTTTAAGATATAAAGTTAGCAAAGC
AATTGTACTGCAAAAGTCCATTGAATACATTCAACATGTTCAAGGCCAAA
AAAAAGTACAAGAAGATGAATTGGCATCACTGAGAAAGGAAGTGGTAGCT
CTGCAAATCATGAGGAAAAATTATGAAGCTTTAGCAAAGGCTCATAAATC
CCAGCCTTCATCCTCATCCCTGTTTCTCAAGGACACAGCCCTTCTTCCTG
GGGAAGTAAAATTTCAAGTCTTTCAGCTTCTAATGGACTCCTTGTTTCAA
TCATTTAACGACAGTGTCAATATGAAAAACTTTTCAGAGTTATCTGGTTG
TGTGTTTTCATGGCTCSAGGAACAAWGTAAGCCTCAGTTACTTCAAGAAC
TTATKCAGCAATTATTGTGTAGAGTGCATGAAGAACATCAAATCAAAAAG
GACGAAAAAAAACTTTACGATAATTAG

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