EMLSAT00000007383, EMLSAT00000007383-703230 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000007383
Unique NameEMLSAT00000007383-703230
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAG F171 LsFepo unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		19.06.2014 - 00:00
27.06.2014 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s41supercontigLSalAtl2s41:637961..639058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000007383 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000007383EMLSAG00000007383-690149Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000032395EMLSAE00000032395-741323Lepeophtheirus salmonisexon
EMLSAE00000032396EMLSAE00000032396-741324Lepeophtheirus salmonisexon
EMLSAE00000032397EMLSAE00000032397-741325Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto779048auto779048Lepeophtheirus salmonispolypeptide
EMLSAP00000007383EMLSAP00000007383Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000007383

>EMLSAP00000007383 ID=EMLSAP00000007383|Name=EMLSAP00000007383|organism=Lepeophtheirus salmonis|type=polypeptide|length=322bp
MKYSKLLALRASSAWGDRLWTFGAGVFMAKFDESHYRLVGIYGFTLCLTV
VLFGTTLGHWIDGSKRFPAALSLLFVQNLSXLIACALIASELTWEYLPYL
IIFIASISNLASQGSNILLEKDWIIVIASGNSELLAKLNSIFRTIDLLCL
XLSPLGAGLLFEYTSNRITALSIGLWNIISFLIEFILYWFVYNDFKNLSN
KDTSNKDSKKGQIQSLKYYVNSPLKYGGLSLALLYLTVLGFDNITWAYCL
SLGISETILGVSTAISALVGVIASLTFPLIRKSFGLYKTGIIGFSCLSIS
LIPCVVSIWIKGKFLKNDSFIF
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mRNA from alignment at LSalAtl2s41:637961..639058-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000007383-703230 ID=EMLSAT00000007383-703230|Name=EMLSAT00000007383|organism=Lepeophtheirus salmonis|type=mRNA|length=1098bp|location=Sequence derived from alignment at LSalAtl2s41:637961..639058- (Lepeophtheirus salmonis)
ATGAAATATTCTAAGCTACTTGCATTAAGAGCTTCATCAGCATGGGGCGA
CAGACTTTGGACATTCGGAGCTGGCGTTTTCATGGCTAAATTTGATGAAA
GCCACTACCGTCTTGTTGGTATCTATGGGTTCACTCTTTGTCTTACTGTC
GTCCTCTTTGGTACAACCCTTGGTCATTGGATTGATGGAAGTAAACGCTT
TCCTGCCGCCTTATCTCTATTGTTTGTACAGGTATCATCTTATAATTCAT
ATTTTTGTTTAGTTTTTTTTATTATCTTGATCTTGTATGTAATTAGAACT
TGAGTKCTCTCATTGCCTGCGCCTTGATAGCGTCTGAATTGACTTGGGAG
TATCTACCCTACCTCATCATTTTCATTGCGTCCATATCAAATCTTGCATC
CCAAGGTTCAAACATTTTGCTAGAAAAAGACTGGATTATCGTTATTGCCA
GTGGAAATTCTGAGCTACTGGCTAAACTTAATTCCATATTTCGGACCATT
GATCTATTGTGTCTGNTTTTATCTCCACTTGGAGCGGGTCTCTTATTTGA
ATATACATCAAATAGGTTTGAATATTTTATACAGAATTATAAAAGATTGC
TTTCATAATTATCTCTATCAAATGTATAGGATAACTGCATTGTCCATTGG
ATTATGGAACATTATCTCCTTTCTCATTGAATTCATCCTTTATTGGTTTG
TGTACAATGACTTTAAGAATCTGTCTAATAAAGATACCTCAAACAAAGAT
TCGAAAAAGGGTCAAATTCAGTCTTTGAAATATTATGTCAATAGTCCTCT
CAAGTATGGGGGTCTCTCACTTGCATTACTTTATCTCACAGTTTTGGGAT
TTGACAATATAACATGGGCTTACTGTCTTAGTCTTGGAATCAGTGAAACC
ATTTTAGGCGTTTCTACTGCTATTTCAGCTCTTGTAGGTGTGATAGCTAG
TTTAACCTTTCCTTTGATTAGGAAAAGTTTTGGGTTATATAAAACGGGTA
TCATTGGCTTCTCATGCCTCTCAATTTCTCTTATTCCTTGTGTAGTCTCG
ATTTGGATTAAAGGCAAGTTTTTGAAAAATGATTCATTTATTTTTTGA
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