EMLSAT00000007542, EMLSAT00000007542-703389 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000007542
Unique Name	EMLSAT00000007542-703389
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s435	supercontig	LSalAtl2s435:249598..253972 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000007542 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000007542	EMLSAG00000007542-690308	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000033170	EMLSAE00000033170-742098	Lepeophtheirus salmonis	exon
EMLSAE00000033171	EMLSAE00000033171-742099	Lepeophtheirus salmonis	exon
EMLSAE00000033172	EMLSAE00000033172-742100	Lepeophtheirus salmonis	exon
EMLSAE00000033173	EMLSAE00000033173-742101	Lepeophtheirus salmonis	exon
EMLSAE00000033174	EMLSAE00000033174-742102	Lepeophtheirus salmonis	exon
EMLSAE00000033175	EMLSAE00000033175-742103	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto775279	auto775279	Lepeophtheirus salmonis	polypeptide
EMLSAP00000007542	EMLSAP00000007542	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s435:249598..253972-

protein sequence of EMLSAP00000007542

>EMLSAP00000007542 ID=EMLSAP00000007542|Name=EMLSAP00000007542|organism=Lepeophtheirus salmonis|type=polypeptide|length=600bp
MTKQDVNMTNPMRYEEMRLSTFKNWPSNAKVSCMTPSVLLMELESAYSPS
HSFLFQVEARKIAKAGFFHTGNESEVQCSWCNVLISQWEYGDQVMAKHRY
ANSNCPFILNISDNVPMILNSSTSDSETNNNDEVDIPPQLLRIRSYSPQR
IESFKSETSRFSTFEDWPLSYIDPSALARSGFIYSGRGDCVRCVFCGEYV
GDWDRNDDPEEEHRNLFSHCPFVRGLEVGNIPISRRPFSSSPSSTDFFLS
ARSSAPSLLVEGNRGYDEVGMRPQRPDNERPYGGTNNSNKVLKIKENPKS
NSEESIGIIKHTGPVHPKYSTVESRLRTFAEWPPALVPRPKELSDAGFYY
IGLSDQVKCFSCDGGLRNWTPQDDPWTEHARWFSKCGFVRLIKGDEFIQE
CIVKKPTTESDPLTEQESGSGGDGEDEKITNLMSTSIVNEVLSMGIDPNK
VKSALKKKVSETGIGFSTSSQLMDAAFGVKRCDGTSTNELAAERVPKTNV
IIPPSTETTSSISTTVAIPPVNNLSISPKLEENAEVGSDLESENRMLKEQ
RQCKICMDNEIGVVFLPCGHLICCTSCAPALQDCPLCRTSIKGTVKTYMS

mRNA from alignment at LSalAtl2s435:249598..253972-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000007542-703389 ID=EMLSAT00000007542-703389|Name=EMLSAT00000007542|organism=Lepeophtheirus salmonis|type=mRNA|length=4375bp|location=Sequence derived from alignment at LSalAtl2s435:249598..253972- (Lepeophtheirus salmonis)
ATGACGAAACAGGATGTGAACATGACGAATCCCATGAGATACGAGGAAAT
GAGACTATCTACATTCAAGAATTGGCCGAGTAATGCGAAAGTAAGTTGCA
TGACACCTTCAGTTCTTCTCATGGAGCTGGAGTCAGCGTATTCTCCTTCA
CATTCCTTTTTGTTCCAGGTGGAAGCAAGGAAGATTGCCAAGGCTGGATT
CTTCCACACGGGAAATGAAAGTGAAGTTCAATGTTCCTGGTGCAATGTTC
TGATCTCCCAATGGGAGTATGGGGATCAAGTGAGTCCTTCCTTCTCATAG
AAGAGTCATTAGGCTCCAAGTCCTAGCTTCCATTATTGAGCACTCAGTAT
TACAAATTCTCGCTTCACGAATCTGCAATTCCTTTCTTTCCTTTCACATT
AGATTCTTGAGATTTTCTCCCTTTCAATTTTTTTTAGTTCGTTTTACTTT
TTTTAAAGGCAATTTTGACTAAGGAAAAAACACATGAAACAGAAACAGAA
ATACAATTACAAACTCCCTTATTTTCTACAATATATAATTATACTTATGA
ACATCTCGAGGGTTGAGTGTCAATTTGTCCTAATTCAAAAATTACAAATT
TACATGTTATTACCATCCAAGAGGTCAAATTTGTAATGTTAATATTGAAA
AACAAAGACGTTCTGACTGTTGAAATAAATGGATCATATCTATTTGATTG
TTAAAATTGGAAAACACAATTATTCAAGCTTCATTCTGTAAAGTTAATAT
TTGAGTTACGACAATTTGGCTCTCAACACACTATTTTTCTGGATTACATT
TGTATTCTCATACGAATTATTCTTAATTTCTATCAACAAATTATTCTTAT
TAACCCTTTTGGTGTGTCGCAAACAGCAATACCAAGTAGCCGAAATGGTC
ATATTTTATTTGAAAGGGACCATATTGGGGCGAATATAAGTCTTAAATCA
AATAAAGGTTATAAAATGTAGCTAAATTTTTGGGTATCTTAAATTATCCC
ACACATTTGAATAATTAGCCTATAATTGACTCAAATATGTCTATGATATA
TTGGGCTGTATTTGTATATATAAAATAAACAACTAATTGGGATTTTATAC
TTTTCTTGATTTGTGCTATTTAATTTATGTGGACGCGCCACATTTGAACT
TGAAGTGGTTTTACCTTTGAAAAATTGGCAATTTAANTCAATATTGCTAC
TAAAGTAAACTGTCTTAGTCTCATCGATTAATTGTAKTTRAAATGAAMMW
CTTTTATTTTAAATATAATGAAAAAAACAAAGGCATTTTTCATCCCTATT
ATACCTTTAAAAAAATGATTTTTTTGACCTAGACACAGCCTTTTCTAAGG
ATTGAAGGATTTCATAATAATAAAATATCAACACATCTTCGGAGTTAAAA
TTCAATTTGTCTGTGAATATGCTTTAGAAGTGTATTTCTGCATTTTTTCT
ACTACAAATATATTAATGTTTAGTTGGCAATGACTTTTGAATAATTTTGT
TGATTAGGGATATCTTATCATTTTTCTCTTGATAGCGTAGGAGTATATAA
TAAATGTCTCATTCATTTTAATGTATGTTTTTCTTTACAGGTTATGGCGA
AACATCGCTATGCAAATTCCAACTGTCCATTTATCTTGAATATATCGGAC
AATGTTCCCATGATTCTTAACTCAAGTACATCAGATTCCGAAACAAATAA
CAGTAAGAAAATCTTTTATATACGCAAATTACCTCTCTTTTTTGTTTAAA
TAATAAAAGTTCATTTATGAATTAACTTTTTTTTTTTAGATGATGAAGTC
GACATACCACCTCAATTGCTTCGTATACGGTCCTATTCTCCACAAAGGAT
TGAATCTTTTAAATCAGAGACGTCCCGTTTCAGTACGTTTGAAGATTGGC
CCCTATCATATATAGATCCCTCTGCATTAGCTAGATCAGGATTTATATAT
TCAGGACGTGGAGATTGTGTTCGATGTGTTTTTTGTGGGGAATATGTGGG
GGATTGGGATCGAAATGATGATCCTGAGGAAGAACATAGGAATTTGTTTT
CACATTGTCCTTTTGTTCGTGGACTTGAAGTAGGAAATATTCCCATAAGT
CGGAGACCTTTTTCTTCTTCGCCTTCTTCTACTGACTTTTTCCTTTCCGC
GCGATCCTCTGCGCCTTCATTATTGGTTGAAGGAAATCGGGGATATGATG
AGGTTGGAATGCGACCTCAGAGACCAGATAATGAAAGACCCTACGGTGGT
AAGACTATCCCTATTTCATATTTATTACTCTAAATTAAATCAAGTAAACG
AGTAAATTATTTGAGTTTGTCTAGTTACACTATCGTTCATTTTACATTCA
CGTATTCGTTCAATTAATCATGTTTTAAAGTTTTTAATCAATCTAATACT
AACAACCTACTTTGTTTCAGGTACAAATAACTCAAACAAAGTACTAAAAA
TCAAAGAAAATCCAAAGTCTAATAGTGAAGAATCCATTGGCATCATTAAA
CACACGGGCCCTGTTCATCCAAAATATTCTACTGTTGAATCAAGGTTACG
CACATTTGCCGAATGGCCCCCAGCTCTAGTACCACGACCTAAGGAATTAT
CTGATGCTGGATTTTACTACATTGGATTAAGTGATCAAGTTAAGTGTTTT
TCATGTGACGGAGGCCTTAGAAATTGGACACCTCAAGACGATCCATGGAC
AGAACATGCTCGATGGTTTTCCAAATGTGGTTTTGTTCGCCTAATTAAGG
GAGATGAATTTATTCAAGAATGTATAGTTAAAAAGCCTACAACAGAGTCT
GATCCATTAACCGAGCAAGAGTCAGGTAGTGGTGGTGATGGTGAGGACGA
GAAAATAACTAATTTAATGTCAACATCAATTGTAAATGAAGTATTATCAA
TGGGTATTGATCCTAATAAAGTGAAATCCGCTTTAAAGAAAAAAGTCTCC
GAAACAGGAATAGGGTTTTCAACTTCTTCACAACTTATGGATGCTGCCTT
TGGAGTAAAAAGATGTGATGGTACCTCTACAAATGAATTAGCAGTAAGTC
AATTTATCAAATATATATATTAAAACTTAAATATTGATTCTTTATTTATT
TATTTATTTAAGGCTGAGAGGGTTCCAAAAACTAATGTCATAATCCCTCC
TTCAACTGAGACAACATCGTCTATTTCCACAACTGTTGCTATACCTCCTG
TAAATAACCTTTCAATTTCACCAAAGCTTGAAGAAAATGCAGAAGTTGGC
TCAGGTATTGATATACAAATACAGTCATCCCTGGACTAACTATTGGCCAC
ACCTTTCACTCTCCCCAGTTTTTTATTTATTTTAACAATACAAAAAAATC
CTTACTTTTCATGCAAAATTACATCATTTGCTATTATCCCGGTCTGATAA
TGTGCTAATGATAACCGAGCGCGACGTTGAAATCTGAACAATTAAAACTT
TAAGGAAATATATTTCCMTAGCCACTATATATGAAAAAAAATATTTGGAG
ACCATATTTAACGTTATATTGTCTGCTCTAACCTTCGATGTAGCCCTCTC
TGGCGTCCATGATGGCCTCAAAACATCTGAAGGCTTTTTACATATTTTTT
ATGTATTTTTTTTTGACATATCGGCTCAGTGTTCGTTTACAATGCCCTTC
ATGGCCATGATGTTCTCGTACCTAAGGGTACAGGACCTGGACTTAACATG
CGACCAGAAGTCGTGTTCCAAAGGCTGATCGGGTAAATAGGGGGCCATAT
TTCTTTTTCCAAGAAATTGATTTTATTGCTCAACCATCTTTCAGTAGCTT
TGGCAGTGTGGAAAGGAGCGCCGTTTTGTTGCAGGACCACATTATCATTT
GGGAAGTTAGCCAAATCCCTCGGGAAGAGGTGTGCCTCCAGATTTTATAT
CCTGCATCAAGAAACGCGCGGATTTGCACGCGAGTGTCACGTTCAGACGA
CATTTTCTTGATAACTTAGATAAAGACGAATGTTATTTTTACACAGTGAT
ATAAAATTTTCAACTTGATAACTTTATTTATGTACGTCTCTGAAAAGCTC
ACCAAAATGTGTCAATTTGCGAATTTTAGTGATCAGATTTCAGGCTCGTA
CCCGGTAGTGGCATAAATTTTGAATTTTTACCTTAAAGCTTCTTTTTATG
ATGTATTATTATTAACTAAGTGACTATTTATTTCTAGATTTGGAATCAGA
GAATCGTATGTTAAAAGAGCAAAGACAGTGCAAAATATGCATGGATAATG
AAATTGGAGTTGTATTTCTACCTTGTGGTCATCTCATCTGCTGTACTTCT
TGTGCTCCCGCTCTTCAGGATTGTCCCTTATGTCGTACTTCAATCAAAGG
AACGGTTAAAACGTACATGTCCTAA

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