EMLSAT00000008285, EMLSAT00000008285-704132 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000008285
Unique NameEMLSAT00000008285-704132
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAG F155 LsHRG1 unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		19.06.2014 - 00:00
27.06.2014 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s500supercontigLSalAtl2s500:196687..197543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000008285 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000008285EMLSAG00000008285-691051Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000036776EMLSAE00000036776-745704Lepeophtheirus salmonisexon
EMLSAE00000036777EMLSAE00000036777-745705Lepeophtheirus salmonisexon
EMLSAE00000036778EMLSAE00000036778-745706Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto774319auto774319Lepeophtheirus salmonispolypeptide
EMLSAP00000008285EMLSAP00000008285Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000008285

>EMLSAP00000008285 ID=EMLSAP00000008285|Name=EMLSAP00000008285|organism=Lepeophtheirus salmonis|type=polypeptide|length=149bp
MCCMSESVKLKFHLVMSSIGFIGGIAGCLVFYIVYSNFHAGTWSLLAGLM
AXICFQFHVFYRFDTLDSHYNEKHLYYFRNLGIFMFLMALIAIISYLVIS
ATLGIPMLPVETSLILASVQAFLTLKWSISVYYFSGFYSSKLQTAYTVA
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mRNA from alignment at LSalAtl2s500:196687..197543-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000008285-704132 ID=EMLSAT00000008285-704132|Name=EMLSAT00000008285|organism=Lepeophtheirus salmonis|type=mRNA|length=857bp|location=Sequence derived from alignment at LSalAtl2s500:196687..197543- (Lepeophtheirus salmonis)
ATGTGTTGCATGTCAGAAAGTGTCAAATTAAAGTTTCATCTCGTTATGAG
CTCTATAGGCTTTATTGGAGGAATAGCTGGATGTCTTGTGTTTTATATTG
TGTACTCCAACTTTCATGCAGGTAGTAATGATGGACGTAAATAATAATGT
CATTTTAAGGAGCTAATGGATTAACATTACTACTACTACTCCGTCTATTA
ATTTTAAAGTATTTATGTATCCATGAAGTGGAATCACATAGTTAATTCAT
TATACAGGCTATTTCGTAATGTGTTTGTTGCATGTTACGTAACGTTCCTA
ATTTATAACACTATAATGTAATGTCTTATAGTTGTATAATCTGTCTTTGT
TTGTTGCTTGCTACAAACAAAGACATAAGGTCATAATTTGACGAACAATC
ATTGTATATTTATAATGTATGTTTCAATTTCTTTCTATTACTTTCAGGAA
CATGGAGTCTGCTAGCAGGCCTCATGGCAGKTATTTGTTTCCAATTCCAT
GTATTTTACCGATTTGACACCTTGGATTCTCATTATAACGAAAAACATTT
ATATTACTTTCGGAATTTAGGCATATTCATGTTTCTTATGGCTTTAATAG
GTAACGCCCTTTTTGAATTATTAATAATAATTCGTTCAATAGTACCTGCT
TACTTTAAATTATCTGACTTTTCTTTTATAGCCATCATATCGTACCTTGT
TATCTCTGCAACTCTTGGCATACCCATGCTCCCGGTAGAAACGAGTCTTA
TACTTGCATCTGTTCAAGCATTTCTCACACTCAAATGGAGTATTTCCGTC
TATTACTTCTCTGGATTCTATTCGTCTAAGCTACAAACGGCGTATACTGT
AGCCTAG
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