EMLSAT00000009982, EMLSAT00000009982-705829 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000009982
Unique NameEMLSAT00000009982-705829
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAF F153 LsFer4 unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		16.06.2014 - 00:00
23.06.2014 - 00:00
NAG F153 LsFer4 unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		19.06.2014 - 00:00
27.06.2014 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s652supercontigLSalAtl2s652:61460..62223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000009982 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000009982EMLSAG00000009982-692748Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000044383EMLSAE00000044383-753311Lepeophtheirus salmonisexon
EMLSAE00000044384EMLSAE00000044384-753312Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771053auto771053Lepeophtheirus salmonispolypeptide
EMLSAP00000009982EMLSAP00000009982Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000009982

>EMLSAP00000009982 ID=EMLSAP00000009982|Name=EMLSAP00000009982|organism=Lepeophtheirus salmonis|type=polypeptide|length=180bp
MSSQIRQNYDSECEALINKQINMELFASYTYLSMGAYFSRDDVALEGFAK
FFYESSSEENTHARNLINYQTLRGGRVVFQDISRPNVETWASPVEAMEAA
LQLEKDVNASLLNVHGSASKKEDPQLCDFLESDYLKEQVDGIKKIGTLLT
RMKRVGPGMILNYIETKLFLIPSIVVQIIH
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mRNA from alignment at LSalAtl2s652:61460..62223+

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000009982-705829 ID=EMLSAT00000009982-705829|Name=EMLSAT00000009982|organism=Lepeophtheirus salmonis|type=mRNA|length=764bp|location=Sequence derived from alignment at LSalAtl2s652:61460..62223+ (Lepeophtheirus salmonis)
ATGAGTTCCCAAATCCGTCAAAACTACGACTCCGAATGCGAGGCTCTCAT
CAACAAACAAATCAACATGGAGCTCTTCGCCTCTTATACCTACTTGTCCA
TGGGGGCCTATTTCTCGAGGGATGATGTTGCTCTAGAAGGATTTGCCAAG
TTTTTCTACGAATCTTCCTCTGAAGAAAACACTCATGCCCGGAATTTGAT
CAACTACCAAACACTCCGTGGGGGCCGRGTTGTGTTTCAAGACATCTCTC
GTCCTAATGTAGAGACTTGGGCCTCTCCCGTTGAGGCAATGGAGGCTGCG
TTACAATTGGAGAAGGATGTCAATGCTTCTCTTCTCAATGTTCACGGTTC
TGCCTCTAAGAAGGAGGATCCACAGCTCTGTGACTTCCTGGAGTCAGACT
ATCTTAAAGAACAAGTGGATGGCATTAAAAAAATTGGAACCCTCTTAACT
CGTATGAAGCGTGTTGGTCCCGGAGTTGGAATGCATTTAATTGACCAGGA
ATTGTTGAAAGAATAACTTAATAAGGATACTTTTATTTGTATATTTGTAA
TCATTTGTTTATCGAAAGTGAATGGAAAAAATTAATTACTCTTGTCTTCT
CAGATTGGTAATTTATTCATTATCAAAATGATAAATTGTCTATCGATCGG
TCCATATACAGATGATATTGAATTACATTGAAACAAAACTGTTTCTCATT
CCATCAATTGTTGTTCAAATCATTCATTGAGGGCGCCATTATTTGATTAT
AATTAATGTGTGAT
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