EMLSAT00000010654, EMLSAT00000010654-706501 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000010654
Unique NameEMLSAT00000010654-706501
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: survival, reduced
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
Q F122 UN30_g17511 female
  1. PreAdult2
  2. Adult
 Reduced survival
survival, reduced 		10.06.2014 - 13:35
22.04.2014 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s705supercontigLSalAtl2s705:72673..76980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000010654 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000010654EMLSAG00000010654-693420Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000047473EMLSAE00000047473-756401Lepeophtheirus salmonisexon
EMLSAE00000047474EMLSAE00000047474-756402Lepeophtheirus salmonisexon
EMLSAE00000047475EMLSAE00000047475-756403Lepeophtheirus salmonisexon
EMLSAE00000047476EMLSAE00000047476-756404Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771415auto771415Lepeophtheirus salmonispolypeptide
EMLSAP00000010654EMLSAP00000010654Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000010654

>EMLSAP00000010654 ID=EMLSAP00000010654|Name=EMLSAP00000010654|organism=Lepeophtheirus salmonis|type=polypeptide|length=355bp
MRIXAVSKALAVLIWTSTSFLTVLASYRQYHMDNADICTSSRNDKIHLGT
GASLFLLESPSIRIQPNEHHTASRCEIHVEAPKDYGIAVHVENMRLRQKA
SGACVDYIRFGQDDNVPFYTMSKSDRLCGSEPGFAYDDSKGDLLIWISLG
GRKATHSWPDISVVNLTLIVTAYKINCIEPDQTQIKCKDSDRCIWNKYVC
DQHFNCPGDISPADEVGCTYDGLQVTSFVKNRKLNYKLLPFTLFVLAFGL
ITCLSAIFLVKQRHKCCFRPSTSSGSCDLPEQTVFSLRELSNTERQTLEN
VYLPLNSLVQVPPTGGMHTEIGGGEGPPPAYDDLFPENIGEDTLSNGNSL
SSPSP
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mRNA from alignment at LSalAtl2s705:72673..76980+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000010654-706501 ID=EMLSAT00000010654-706501|Name=EMLSAT00000010654|organism=Lepeophtheirus salmonis|type=mRNA|length=4308bp|location=Sequence derived from alignment at LSalAtl2s705:72673..76980+ (Lepeophtheirus salmonis)
TCGAAATACCTCTTGGAACTTTTCAGCACTATTGTCTGACGTCATTTATT
GAGTTTAATTATTAGTGATAGACTGTGAGCTGAACAGAGTCGAATTCCAT
AATTATTCAGTATAATAATTTATTATTTATTAAATCAACTGCGAAAATAC
CAATTTGTGTGACGAGTAGTTTTAATCAATTAATAAATGAGCAAAAAAAT
AAGAATAAATGGATTCCCATTCTGGGCCTGGGAATGAAGCGTGGACCTAT
GACATTTTCACTCCTTTTAAATAATAATAATAACTAGCAGGAAAAGGGCG
GTAAAGTAGATGTAGAAACTGAATCATTATTAATTAATATTTTATACTGA
GAAGGTAATAAGTAACAGTAATTTCAGCTTGGAAGGAGATTCAAAGTTCA
CATTAATCGTTATTATCATTTTACGAAGCTGCTCAAGATCCTAATTAGTA
ATTTATATCATTATCATCTCGTTGATATCTCTTTGAAGAAGGAAGATAGA
ATGAGAATGGAAATGACGGAGTTGCATAAGGATTTTGGAACTTTTGCAAA
CTCTGTTATTGTGGCGGAGAAGGAACTGGATAAATTGGAAAGCAAGTTCA
AGTCCAATATGAGTGGAAAGGATTTCATAAAGATTTTGAGTCAAGTGAGA
GCGTTACAGAAAATGGATTTGAAGGCAGAGGTGAGAGACGAGAATTTGCG
AAGTACTACGAGTTCATGAGAATATTAATTAATAATAGGTGGATCACGTG
CGAAAAATAGAGAAAGAAACAATTGAAAGAACACTGGATGATATGACTTC
TTGTTACTCGGCGTCGGAAGACTTTCAAAGACTCCTGAAATATGAAGTTC
TTCCAAGACATAGTGGTAGACAAAGAGAGCAGCTAGATAAATGATCATTG
ATTAGTAAAATCCATCATTCACGACATCATCAGTATAGCTTCTGAGTTCG
AGTTTATGTTTTTGCGTTTTTTAATAGATTAAGATACCTACTTATATATT
AAAATTATTATTATATGATGTACGTACATACATACATCAAGTAATAATAT
ATTATCCTAAGCTGCTGTCAGCTTGCTTAGCTGACTTTATTTAATAACAA
AATATTAAATAGAATAATAATAACACTTGACTCGCATGTACATACATTTC
TGATTTTATTGAATTTGTTATAATAGTCATTCGCTCAATACTTACTGACA
CTACTTCTTGTTCTAGTATTACAGAGTGATTCTGCATGAGACTTGATTCA
TTTCCCCTTTTTTCATATTGTAATCTTTTTATGCTAGTTCTCTCTAACAC
AGCCCCCCCCCCTAACCTCCCATCTTAGGCATTCCTTTATGATTCGATCT
ACCCAACTGACAACTACTCTGTCTACTTCCCATTGATTCCACTTGAATGA
AGGACGAGCTCTTTTTCGCTAAAAGTACACTTATCGGAGAATGTAATGAG
GATTSCAGCCGTTTCCAAGGCCTTAGCTGTCTTGATATGGACTTCCACCT
CCTTCCTCACCGTACTAGCCTCCTACAGACAGTATCATATGGATAATGCA
GACATTTGCACTAGTTCTCGGAACGATAAGATCCACCTTGGAACCGGAGC
CTCTCTTTTTCTTTTGGAGTCTCCTTCCATTCGCATTCAACCCAATGAAC
ATCATACAGCCTCTCGCTGTGAAATTCATGTAGAAGCACCCAAAGACTAT
GGCATAGCAGTGCATGTAGAAAACATGCGACTACGTCAAAAGGCTAGTGG
GGCATGTGTTGACTACATTCGCTTTGGCCAAGACGATAATGTTCCCTTTT
ACACTATGAGTAAAAGTGATCGTCTATGTGGATCTGAACCTGGCTTTGCC
TATGATGATTCTAAAGGAGATCTTCTTATATGGATATCCCTCGGAGGGAG
GAAGGCAACACATTCTTGGCCGGATATCAGTGTCGTTAATCTTACTCTCA
TCGTCACTGCGTATAAAATTAATTGTATTGAGCCAGATCAGACTCAGATT
AAGTGCAAAGATAGTGATCGCTGTATCTGGAACAAATATGTCTGCGATCA
ACATTTTAACTGCCCAGGTGATATAAGTCCAGCAGATGAGGTTGGATGCA
CTTACGATGGACTCCAAGTCACTTCCTTTGTCAAAAACAGAAAACTCAAC
TATAAATTGCTTCCCTTTACACTCTTTGTGCTAGCTTTTGGTCTCATTAC
ATGTCTTTCTGCAATATTTCTCGTCAAACAAAGACACAAGTGCTGTTTTA
GACCCTCAACTTCTAGTGGAAGCTGTGATTTACCAGAACAAACAGTTTTT
TCACTTAGAGAACTCTCCAATACGGAACGACAGACTTTAGAAAATGTATA
TCTTCCACTCAATAGTCTTGTACAGGTACCTCCGACTGGGGGAATGCATA
CTGAAATCGGAGGTGGCGAGGGTCCTCCACCCGCTTACGATGATTTATTT
CCTGAGAATATTGGAGAGGATACCCTCAGTAATGGGAACTCATTATCATC
GCCATCACCATAGGTTCATTCACTTACAGATATCATTTCCATCGTCCGTC
CTCTCCACAAAGAAAATAACCATACCTAGTTATCAGTTCTAGCACTTATT
ATACATCATTTGTCAGATGTAGATAACAAGTTGCCTCATTCTTCTAATTC
CCTGTTGTAATTATACGTCTACCTCTTCGTACTTTTTGTACTTCTTACGA
AGATCCATAAATCCACTATTTCAATATGTGTGTATATATTTACATGCATA
ATATCTAAGGTTTTATTTGCCTTCTCACCCAAGATTTGATTATCTTCTTT
TTCAAACTTTTTTTCTAATTAGTATAATAATATATTATCTACATATGTAT
ATATAGAGATTTACACTTATAGCATACATATAATATTATGTATATAATTT
TATTTTTCGATTGCATCTTCTTTTTTCTCTGCCTATGAATGGGTATATCT
GATTTGTACATATGCACTTCGTGCTCTTCTACTAATCAAAAATCTATGTT
TTTTGTTCTTTATCATAATTATTATTAGCCTATCAATAATGATTATTATT
AACAACTCAATAATTGGCTTTCTTTTCTGAAGAATTCAGTCAGAATTTAA
TTGTCATAATAGATTAATTAATTATTATTATATTAACTTTATTTTGCGTG
AATGTAATTTCAAAGACTGTATGAGATTTTTGATTCAAAAATCTCAAGTT
TTTCATTTTCAAATATATAAATTTCTATTAACATAATGCAAAAAATATTC
CCATTGATTAATTATGATTTTCGAGTATAAACATGCCTTTATTTAAATTG
AATTTTGCTAAAAATTATCATTTATAAATTATAATTATTGATTTATTCAT
TTCTTAATGTGATTCGCCTAAAACAGAAAATTTATAGTTCAATTATGGTA
CGAAGTTTGTTAGAGTTATCTTTAAAGACCTTACTATTGGGTAATTTTTT
ATCAGAAAACGCAAATTCCGTAAATGGGCTTCCGACAACCCTTAAAGATA
GGCTGTTAAGCCTATTATCAAGTAGAAGAAACGGTTTGGCGGATTTAAAT
CTCTTGACAGTGCTAACTCATTCAAAAACTACAGATCTTGATCTATCATT
AGTTGATTGGATTGATGATGAAGCTTTGATATTAACATCTGGCAGTATAT
TTCTCAGAAGCTTAAATTTGAGTGCAGTAAGCTGCGGTGATATCCGAATT
GGCGTAACCCCTAAAGGTATGTCGATCTTACTCTTGTTTTCTTCTTTCAC
TAAAATAATGTATTTCCAAATTACTCAAGGGCTCATGGAAATTCTTAGAA
ATAAACGATTTCTTCATTATCTTAATCTTCGTGGAAACTCAAGAGCTCTC
AATAACGAAGTATTTGAAATTATTAAAAGAGAATGCCCGTCACTAAAAAC
AATAGATATGAGTCGATGCAGTCCTGGTGTGAATGACTATGGTTTGTCAG
TATTGAGGGATTTGCCTCTTACATCTCTTAGTATAAGTTCAACGGAAATT
ACAGATAAAGCCTTGATAGGCTTATCTCAAGGCGATTGCAGGAAATCTCT
ACAGGAAATTCGAATTGACGGTTGTTTAGAAGTATCGGATTCGGGTGTAG
GTGCAATTTTAGCATCATGCAATAAACTTAATGTGTTTCTTTTTGACTAT
AGTCCTAAACTCACTCATGTTGCAAGAAGAACATTAGACAATTACTTTGG
ATGTAGTCGAATCAAGCAAATATCCTGGACGATTCCAATTTGAATATAAA
TCAATTGATTGAATTCAGTTTATCGACTTTTTTTTTTTACTAATGGAATG
AATAATTA
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