EMLSAT00000012486, EMLSAT00000012486-708333 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000012486
Unique Name	EMLSAT00000012486-708333
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s91	supercontig	LSalAtl2s91:348479..353390 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000012486 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000012486	EMLSAG00000012486-695252	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000056077	EMLSAE00000056077-765005	Lepeophtheirus salmonis	exon
EMLSAE00000056078	EMLSAE00000056078-765006	Lepeophtheirus salmonis	exon
EMLSAE00000056079	EMLSAE00000056079-765007	Lepeophtheirus salmonis	exon
EMLSAE00000056080	EMLSAE00000056080-765008	Lepeophtheirus salmonis	exon
EMLSAE00000056081	EMLSAE00000056081-765009	Lepeophtheirus salmonis	exon
EMLSAE00000056082	EMLSAE00000056082-765010	Lepeophtheirus salmonis	exon
EMLSAE00000056083	EMLSAE00000056083-765011	Lepeophtheirus salmonis	exon
EMLSAE00000056084	EMLSAE00000056084-765012	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto776682	auto776682	Lepeophtheirus salmonis	polypeptide
EMLSAP00000012486	EMLSAP00000012486	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s91:348479..353390-

protein sequence of EMLSAP00000012486

>EMLSAP00000012486 ID=EMLSAP00000012486|Name=EMLSAP00000012486|organism=Lepeophtheirus salmonis|type=polypeptide|length=760bp
MIAADSTVSGGPNNPGTSTPPAHFLLPPPRGLIVNPAAYLAASPFLYGNS
ALSYAREWQAKLKELQDAKVVXATVAALNSSSQAAQEHLLSKXPSSPSCG
NSSNTNSNNSGGSPPSASLFESLKETSIQKGRSSPKKSSPPLSFTTAASN
SNNSNNILSSLNRKSTELMKMDSNGALNLASSASPSPTDSGGGNNLIMAG
GGGXVGRNGGSTQAFGIEACVVCGDRASGRHYGAISCEGCKGFFKRSIRK
QLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRIMKQIYESYLAPRV
SAVQSERRPIVPANVSNAVTAALAENISISNAKNSSPVYHIYDSPTLLSR
NSLGPSSDSILSSHDTNVKAASTIVLGSGGIGSGGIGDEDNTSTDAGSLN
GDYSHLDASHVLAAREKSLISXAMDVMTKTICEDEEEEPNEDINNSSIDE
SETIIQDSLVNFKLSTPSPTPFYLNVHFICETASRLLFLSVHWVRTIPCF
GQLSYESQVGLVRNSWSDIFVLGMSQCSKSMNLQSILTAIVSHLQTSVSQ
ERLSATRVRQVTSTICKVQEYVRTMSKMCITDHEYAYLKAISLFGADQVG
ISSGKKIDKLRQKTVSELKEYCTLQDDENRFSNLLLRLSPLRSLQPDILE
ELFFAGLIGNVQIDSVVPYILKMEASEYQSQFKWKLMNLETNHHPSWRII
ILRLPLFLYKNEKNKTLIFIWFLVFFLRNEKIEDFFCITVHRSSKDFMLL
NVIFLFFTNL

mRNA from alignment at LSalAtl2s91:348479..353390-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000012486-708333 ID=EMLSAT00000012486-708333|Name=EMLSAT00000012486|organism=Lepeophtheirus salmonis|type=mRNA|length=4912bp|location=Sequence derived from alignment at LSalAtl2s91:348479..353390- (Lepeophtheirus salmonis)
ATGATTGCAGCGGACTCCACTGTTTCCGGAGGACCCAATAATCCCGGAAC
ATCCACTCCTCCAGCTCATTTTCTGCTACCKCCTCCACGTGGGCTCATAG
TTAATCCCGCTGCCTATTTGGCTGCGAGTCCATTTCTCTATGGAAACTCT
GCCCTCAGGTTAGAAAGAATGAAGAGTTTATTATTGTACATGATAATATA
ATTTAACAACACTAAAAAGGATCTAATTTCAAATGTAGCAAGCAAGAAAT
TTCTTCTACCTTTGCGCGATTTGTAATTTATAACAAGAGGCGTGATTAAT
ACATCTATTTTTTGTATTTTTTAATACTATTAACAACTAAAGGCTCCATG
TTTGTTGTGTAGTAGTTGTTTTTTTCTTTACATCTGCTTGCATGCTACTT
ACTTACACAAAGTTAGTATACATGCAGTAGTAATCACGTGTGGCCTGTGC
ATGTTGCAAGTGACTTATATATTATATACGAATAATATGTTTGATGAATG
AATTTATACAATATGTTCCTCTCCTTTTTAACTTATTTGTGTTTATATTT
CTAGTTATGCACGGGAATGGCAAGCTAAACTCAAAGAGCTTCAAGACGCA
AAGGTCGTKSCTGCCACAGTTGCTGCACTCAACTCATCCTCACAAGCAGC
ACAAGAACACCTCCTATCTAAATTKCCCTCATCTCCTTCCTGTGGAAACA
GTAGTAATACCAACAGCAACAACTCTGGAGGATCCCCTCCCTCCGCATCC
CTCTTTGAATCCCTCAAAGAGACTTCAATACAAAAAGGCCGTTCTAGTCC
GAAAAAGAGCTCCCCTCCCCTCTCCTTCACTACTGCAGCCTCAAACAGTA
ACAACAGCAACAATATTTTATCCTCACTGAATCGCAAATCCACGGAATTG
ATGAAGATGGACTCCAATGGAGCCCTTAATCTGGCCTCCTCTGCATCTCC
ATCTCCAACTGACTCCGGAGGTGGCAACAATCTTATAATGGCTGGSGGAG
GAGGTTSGGTCGGTAGAAATGGTGGCTCAACWCAAGCCTTTGGGATTGAA
GCCTGTGTCGTTTGTGGTGACCGAGCTTCTGGTAATTTAAAAAATCCTTT
TATTTACTACTATTTTTAATTCAACAATGTGCACATATAGGCCGACACTA
TGGGGCTATCAGCTGCGAGGGATGCAAAGGTTTTTTCAAACGGTCGATAC
GGAAACAGCTCGGATATCAATGTCGAGGCAACAAAGACTGTGAAGTAACG
AAACATCATCGGAATCGATGTCAGTACTGTCGTTTACAAAAATGCCTCGC
CATGGGGATGAGAAGTGATTGTAAGTAGGGGTTTTACTGATCGGAAAAGG
GGGGAGGGTAGTGGGGATTGGAGCTGTTACKCCAGCCATTCACAGGACTC
TCAAGTTCTAAATGTAATTGATGAATAATACGCTCTATTTATTAACAACA
GATAATATGTACATTAAACCCCACACAACTTGTGCCGTAGTTTAAGGGCT
TTATTAGGGGATGGCTCCTGGATTAGAAATATTCTTATGATTAATTATAA
ATGCGTGAGACCCTGATATCCAATGATATCAATGCTTGTGAGGCTAGACA
GCCCTGATTCATTCCACCATACTTATAGGCCTATAATTAAAGGTATTTAT
GCACATAGCCATGAATGCAAAAGTATTACTGAATAGGCGCGCATCCTCTT
AAAATATTTAAAGCAATTCCTATGAATATAATTTATTCCTCCTGTTTTTT
TTGACCACATCATCTTCTTCTAGATCATCATATGTTGAAGTCAACATCTG
TTTCAAACATTTCCATGTTACCACTTATACGTTTTACTACTACAATAATG
GTAGTACAACTWCTGGTTGCTATTAAGGTCWTTTTTTGGYGNGGGGGGGG
GGGGAGTTGGAAATTGTGTGGTCTAAATATCCATATATATAGACATACAG
ATCTTACTTAATTATTACTATTAAAAACATAACTCTCAAATTATTATGAT
GTTAAATATATCTCTCTCTTTTCTTTGCTCCTGGGTACTTTCTTCATATA
TATATATATACATATTTAAAACCATAATTGTAATGATAAAATACTAAAAG
AGTTGATCTTTTACAAGAAAAAGTTAGAACTACATGTATAGAGAGGGGTT
TGCCCATGCCTCAGGTCAAAATTATGCTTCCAACGAGAACAACAGCAAAT
GTTATAATGAAGAGGAAACATCCCTTTGATACTTTTTGATATATGCTTTA
TTTAACTATAACAGTGATCATTTTAATTACCAACGTTCATTTGTTTATTT
CATTTTGAATGTCCATTAAAATGATTCATTTTGTCCCAGTTGCAACTCAA
AAATTAGACAAAACTTTTTGAAGGAGGGATTGAGAGTTCTATTGCAGATA
AAGATCATGCAATTATTGAATATCCAGGGGTACACTTGCTCCCTCTAGGT
GTACGTGGAGGAACGTCATAAATAGATGGTTAAACCTCCGTTATTATATA
TTTCATTTGATATCTTTATATTTCATGATGTGGTGCACACTCTAAATCAG
TGCCTTACATGATCGATATAATGATGTACTATTTGGATTATAATTACTAA
TGAACTATGAGTATTCTGTGGCACATTGTAAAGTTCAAATGCCCAGAGTT
ATATTATATAATATTCGTAAATACATGATAAATGAGTCATGTTTATAGAT
CCCATAGAAATAATCGCTTCAGTGAATAGTTTGTAACTAAAATGAACCGA
TTCTTGTAATTAAATAAGGAATTAGGGGACGTAGAAATGACTATTTCTAC
GTGTTTCAACTTGTACATGATCTACTATATTATATTACTTTTCCTCCTCA
AATGTTGTAAATTACCTTTAATGATAACAATCATGGAACGTACATAATTG
TAATTAATATATAGTCAACTTTTAACAACTTGTCCTTCAACTTTTTTTAT
TTTTTCTTCAATATTTGTAATTTTAAAAGTTCGTCCCTTGGTGAGTGTTG
TTGGAAGAGAGAATTATTCGTCATTGTTGTCCTTTTGTTAAAACAAAAAA
TATCAAGGATTTGCCATTGAAGAAGAAGACGCGCGATTCTTTCTTTTTGG
CAAATATTTACATTAACAAACCATGATATTCATTTTTTTATATAATTTTA
AATGTAGCTATATATTATATTTAAATACTCTGTATATTCAGTCATGAAAC
AGATCTATGAATCATATTTAGCACCCCGTGTTTCAGCTGTTCAATCTGAG
CGAAGACCTATCGTTCCGGCCAATGTATCTAATGCAGTAACAGCAGCACT
TGCAGAGAATATTTCCATTAGCAACGCAAAGAACTCATCCCCAGTCTATC
ACATCTATGACTCCCCTACTCTTCTATCCAGGAATTCATTGGGACCTTCA
TCAGGTAAGTTACACAATCCTTGATTGTATATTAAGTAATGACATCCAAT
GTTGTGTCCTTCACGATGCATTAAATGTGACCTTTCTTTTTTCTCTTTCT
CATCATGACTTTTAGATTCCATTTTGTCATCCCATGATACCAATGTTAAA
GCGGCATCAACTATAGTATTAGGCAGTGGTGGAATTGGAAGCGGAGGMAT
AGGTGATGAAGACAATACTTCCACAGATGCGGGTTCCCTCAACGGAGACT
ATTCTCACCTAGACGCCTCACATGTCCTCGCTGCAAGAGAAAAGTCTCTC
ATTTCASGAGCCATGGATGTCATGACGAAAACAATCTGTGAGGATGAGGA
AGAGGAGCCCAATGAGGACATTAATAACAGTAGTATCGACGAGTCAGAAA
CTATCATTCAAGACTCTCTTGTGAACTTTAAACTCAGCACTCCAAGTCCT
ACTCCATTTTATCTTAATGTACATTTTATCTGTGAAACAGCATCCAGGCT
CCTCTTTCTTTCCGTTCACTGGGTCAGAACCATTCCTTGTTTTGGTCAGT
TGAGGTAAATATAAGTGCCAGCAATATGGATTTTTGTCAATCCTAATATC
ACTACATTACAGTTATGAAAGCCAGGTCGGCCTTGTTCGTAACTCATGGT
CGGACATATTTGTACTCGGTATGTCTCAATGCTCAAAGAGTATGAACCTC
CAAAGTATTCTAACCGCTATCGTCAGTCATCTACAAACTTCAGTCTCTCA
AGAAAGACTGAGTGCCACAAGAGTACGTCAAGTTACGAGTACCATTTGTA
AGGTTCAAGAGTATGTACGAACCATGTCAAAAATGTGCATCACGGATCAC
GAATATGCCTATTTAAAGGCTATTTCTCTCTTTGGAGCAGGTAATTAATC
ATCTTCATAATATTTCATTATAGCGAACATTCCTTCATACCTTACAGATC
AAGTCGGTATATCCTCAGGAAAGAAAATCGATAAACTCCGACAAAAAACA
GTCTCTGAGCTGAAAGAGTACTGCACTCTACAAGATGATGAAAATCGCTT
CTCAAACTTGCTCCTTCGTCTTTCGCCCCTTCGCTCTCTTCAACCCGACA
TTTTAGAAGAACTCTTCTTTGCTGGACTCATTGGCAATGTTCAAATAGAT
TCAGTTGTACCTTACATTTTAAAGATGGAAGCATCCGAGTATCAGTCTCA
ATTCGTCAAAAGTAAAGACATTCATTAATTAACTTTCATGGTTTTCTAAA
CACTATTTTCTTATCCATCATATAGAAATGGAAGTTGATGAACCTGGAGA
CGAATCATCATCCAAGTTGGAGAATAATCATTCTTCGTCTACCCCTGTTT
CTTTATAAGAATGAAAAGAATAAAACACTGATTTTTATATGGTTTTTGGT
TTTTTTTTTGAGGAACGAAAAAATTGAGGACTTCTTTTGCATTACTGTTC
ATAGAAGTAGCAAAGATTTTATGTTATTGAATGTTATTTTTTTGTTTTTT
ACAAACTTATAA

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