EMLSAT00000012559, EMLSAT00000012559-708406 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000012559
Unique Name	EMLSAT00000012559-708406
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s92	supercontig	LSalAtl2s92:1228661..1232054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000012559 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000012559	EMLSAG00000012559-695325	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000056407	EMLSAE00000056407-765335	Lepeophtheirus salmonis	exon
EMLSAE00000056408	EMLSAE00000056408-765336	Lepeophtheirus salmonis	exon
EMLSAE00000056409	EMLSAE00000056409-765337	Lepeophtheirus salmonis	exon
EMLSAE00000056410	EMLSAE00000056410-765338	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto780542	auto780542	Lepeophtheirus salmonis	polypeptide
EMLSAP00000012559	EMLSAP00000012559	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s92:1228661..1232054+

protein sequence of EMLSAP00000012559

>EMLSAP00000012559 ID=EMLSAP00000012559|Name=EMLSAP00000012559|organism=Lepeophtheirus salmonis|type=polypeptide|length=109bp
MSEIWNSIASSLVCYTSSFPDPVTFCDVRRGEGCSIMGPSYGCSXSRDQM
SCHVSLCNAPMEVFILFGVILLLLGIVLLTGCCFCCFCCCCGKCFGARGS
SICHFCLLD

mRNA from alignment at LSalAtl2s92:1228661..1232054+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000012559-708406 ID=EMLSAT00000012559-708406|Name=EMLSAT00000012559|organism=Lepeophtheirus salmonis|type=mRNA|length=3394bp|location=Sequence derived from alignment at LSalAtl2s92:1228661..1232054+ (Lepeophtheirus salmonis)
AATCTGTCTGCATGAAGGCACTCTCAGGGATTTACAATTGTGAAATGTAA
TATAGGCACTATAAAAAAAAGTGAAGAAAGATATTCGTCAAATTTTGAAG
GTTGCTTTTTACATTTTTACGAACACGGCACAGTGAAGGTAGTAGGTCCG
AAGTAGAAACACGAAACGAGAACAAAAAGAATAATTATAACAGTAGTAAT
AAAACATTGAATTAATTTTTCGGACTACTTTTTGAATCATATTATCAGAG
AAGTAAGTTACTCTCCGATGCTTTCTTGCTCTTTTTTATATCATATAAAT
AATTTCCTTCTCCATGACTTTCCTAGACAGGTATTACTGTCTATCTACAT
CAAATTATATTCATGCATCTTGATCGAATATTTATTTGAAGTATCGAAAA
AGTTACATTGGCGTGCAAACTTCCTTACTCAGCATTCTTTATTTTTTCCC
TTTAAAGTTTAATTAAAATTATTTATTAGTAAATCAATTAGAAGTGACTC
ATTTATTCTTTTATAATACAATACAATGATTAAATTCAAATCTATCACTA
CTTAAGTTATTTCTCTTATATGTTAGAGAGAATATTATTTAAAGGAAACG
CAAAATACACCTTATTAAATCTTCATTATTTATTATTCTCCTCAAATAGT
AAACGGAGAAGCATGTCAGAGATTTGGAATAGCATAGCTTCCAGCCTAGT
GGTAAGCAAAGCATTGATTAAACAAAATTATTTATATAAATGTTCAAATG
CGACAAAAAAAAATTACAATACGATAATAATTAATAAATTACTTAACCAT
TCTTACAGTGTTATACTTCCTCCTTCCCGGATCCAGTGACGTTTTGTGAT
GTTCGACGTGGAGAAGGCTGCTCCATTATGGGGCCTTCCTATGGATGTTC
CMCCAGCCGTGATCAAATGAGTTGTCATGTGTCTCTTTGTAATGCTCCAA
TGGAAGTGTTTATTCTGTTTGGGGTTATTCTACTTTTGCTGGGAATTGTT
TTGCTGACTGGATGCTGCTTCTGCTGTTTTTGTTGTTGTTGTGGTAAATG
CTTTGGGGCTCGGGGATCATCCATTTGTCATTTTTGTCGTAAGTGTTTTA
TTTATATTTTGGAATTATACTTATAAATAATAATTTTATTAGACCAAAAT
CCTAAATTATTTTATTGAATCATAGAGTCAGATCTAAAATTAATTTATTA
AATTAAAAAATAATACACAAAATAGGTAATTTTTTTCAATAATTCAAATA
TTAACCTCCCCCTCCCCCTATAAACCGATAAAGATTGATTTTAGAGCGGA
AAACTCCATTCAAATCCAAATAAATAACAAAATATTAAGGATATGAACTA
CTTAAGAATTGAGTGCAACAAATGTTTGTGAGCATTACTTTTGATGTAAT
TTAACTTATTTATACTATATTCCAGAATATATTTATGACTCAAATCAAAA
AATCTGTAGACTTGAAACAGATCTGATAAAAATATTTATGTAATTGACCT
TTAGAGAAAATATTTGAGACTCTACTCGATACTCAATACCAACACTTTGG
AACCTACATGAAAAGGAACATAGAATATAATGACTTTGTCCCTACACTAG
CTAATATCTAAAAGTAGATAATTAAAAATATCAAATTCAGTAAATTTGTT
TTAACTTTGAGCCCTGCTTTCAATTTAATTATATTCATTAATCATTGCTA
ATATCTAAAATATCTGTATCAAATAACAACTATACATGGTATAATATACT
TATATAATTATTTCATGTCATAAAATATGAGAAGGAGTAGACATAATCTC
ATTATTGATTATACAATTTGTAACTAGCAATGACTAAAAAAATTGATTTT
TCCTTGTGATTTTAATTTCAAATCTAATTAATTTAACTTTCCAAGCCGAA
AGTAATTCCCTAAGCTCTTTGATATCCAAGTAGAACGGATTTAATTAGCT
CACTTCTCTACATCAGTATCAAATTTCTTCTGCAGTATACCTGATTTTTT
TAATGTATATTTTGATTTCCGATAAATATTCAAATCACTTATTTTAAAAA
ATATTGCAAGTACACATATTTTATATATATATAGATAGATAAATAAATAT
CTTCCCATATTTATAACTCACATAATATATACTAACACTATTTATTTTTT
CAAGCAATTCATCGTATATATCCTAGGCCAATATCCATACCCGTACAAAA
AACAATTCATCACCACCATGGAATCCTAATGCCGTCTGAAGGATCTGGAA
GCAATCCCTCTGTCATAGAGAATGAAACCTCAATAAATATGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGAAGAACTATTAATTA
AATTTTATAGCAGAAAACATTAATTGAGACTCTTTTCCAACTTTAAAAAT
TACATCAATCATGTGTTGAGGGCTGTTTCAATCTATCTATATATAATGTA
ATAAATTTGCCTTTCATTGAATTTAGTGGTATATGGAGGGATCAGCAACC
TATGGCACGCGGAGGCATATTCACTAGCACGCGCAAATTAGAATATATTC
CCGAAGTTTGTCTATGTTTTTTACCATGATGGTTGATACTGGCCTTCCCC
TGGAATATGTTTTAAGCTAGATGTGAATACGATAGACATACGTTTAGATA
GTGTTGTGTCAGTCCGTACATAAGGCTGAAGACTGCAGTTCCGTCTAGTT
CAGTCCTAAAACATAAAAATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCATTACAGACTGACACACTAAGTATAGATAGTTATAAAAAACT
ATTTTAGATAGAATAACTCAAAGGAGGTGGCTTCTTTTGAAATGGTACCC
CTTCAAAGTACTCAAAAAGTATATTTTGTTTTATAGTATTAGAT

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