EMLSAG00000012559, EMLSAG00000012559-695325 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012559
Unique NameEMLSAG00000012559-695325
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012559 vs. C. finmarchicus
Match: gi|592937636|gb|GAXK01020917.1| (TSA: Calanus finmarchicus comp13216_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.612e+0
Identity = 11/34 (32.35%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   14 CYTSSFPDPVTFCDVRRGEGCSIMGPSYGCSXSR 47
            C  + +      C+  RG+G ++ GP+YG S  R
Sbjct:  791 CRNNGYAISTPVCEQYRGDGIAVRGPAYGMSTIR 892
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BLAST of EMLSAG00000012559 vs. L. salmonis peptides
Match: EMLSAP00000012559 (pep:novel supercontig:LSalAtl2s:LSalAtl2s92:1228661:1232054:1 gene:EMLSAG00000012559 transcript:EMLSAT00000012559 description:"maker-LSalAtl2s92-snap-gene-12.7")

HSP 1 Score: 212.616 bits (540), Expect = 4.246e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MSEIWNSIASSLVCYTSSFPDPVTFCDVRRGEGCSIMGPSYGCSXSRDQMSCHVSLCNAPMEVFILFGVILLLLGIVLLTGCCFCCFCCCCGKCFGARGSSICHFCLLD 109
            MSEIWNSIASSLVCYTSSFPDPVTFCDVRRGEGCSIMGPSYGCSXSRDQMSCHVSLCNAPMEVFILFGVILLLLGIVLLTGCCFCCFCCCCGKCFGARGSSICHFCLLD
Sbjct:    1 MSEIWNSIASSLVCYTSSFPDPVTFCDVRRGEGCSIMGPSYGCSXSRDQMSCHVSLCNAPMEVFILFGVILLLLGIVLLTGCCFCCFCCCCGKCFGARGSSICHFCLLD 109
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012559 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012559 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592937636|gb|GAXK01020917.1|1.612e+032.35TSA: Calanus finmarchicus comp13216_c0_seq1 transc... [more]
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BLAST of EMLSAG00000012559 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000125594.246e-72100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s92:122866... [more]
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BLAST of EMLSAG00000012559 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012559 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012559 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012559 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s92supercontigLSalAtl2s92:1228661..1232054 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s92-snap-gene-12.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012559 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012559EMLSAT00000012559-708406Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s92:1228661..1232054+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012559-695325 ID=EMLSAG00000012559-695325|Name=EMLSAG00000012559|organism=Lepeophtheirus salmonis|type=gene|length=3394bp|location=Sequence derived from alignment at LSalAtl2s92:1228661..1232054+ (Lepeophtheirus salmonis)
AATCTGTCTGCATGAAGGCACTCTCAGGGATTTACAATTGTGAAATGTAA
TATAGGCACTATAAAAAAAAGTGAAGAAAGATATTCGTCAAATTTTGAAG
GTTGCTTTTTACATTTTTACGAACACGGCACAGTGAAGGTAGTAGGTCCG
AAGTAGAAACACGAAACGAGAACAAAAAGAATAATTATAACAGTAGTAAT
AAAACATTGAATTAATTTTTCGGACTACTTTTTGAATCATATTATCAGAG
AAGTAAGTTACTCTCCGATGCTTTCTTGCTCTTTTTTATATCATATAAAT
AATTTCCTTCTCCATGACTTTCCTAGACAGGTATTACTGTCTATCTACAT
CAAATTATATTCATGCATCTTGATCGAATATTTATTTGAAGTATCGAAAA
AGTTACATTGGCGTGCAAACTTCCTTACTCAGCATTCTTTATTTTTTCCC
TTTAAAGTTTAATTAAAATTATTTATTAGTAAATCAATTAGAAGTGACTC
ATTTATTCTTTTATAATACAATACAATGATTAAATTCAAATCTATCACTA
CTTAAGTTATTTCTCTTATATGTTAGAGAGAATATTATTTAAAGGAAACG
CAAAATACACCTTATTAAATCTTCATTATTTATTATTCTCCTCAAATAGT
AAACGGAGAAGCATGTCAGAGATTTGGAATAGCATAGCTTCCAGCCTAGT
GGTAAGCAAAGCATTGATTAAACAAAATTATTTATATAAATGTTCAAATG
CGACAAAAAAAAATTACAATACGATAATAATTAATAAATTACTTAACCAT
TCTTACAGTGTTATACTTCCTCCTTCCCGGATCCAGTGACGTTTTGTGAT
GTTCGACGTGGAGAAGGCTGCTCCATTATGGGGCCTTCCTATGGATGTTC
CMCCAGCCGTGATCAAATGAGTTGTCATGTGTCTCTTTGTAATGCTCCAA
TGGAAGTGTTTATTCTGTTTGGGGTTATTCTACTTTTGCTGGGAATTGTT
TTGCTGACTGGATGCTGCTTCTGCTGTTTTTGTTGTTGTTGTGGTAAATG
CTTTGGGGCTCGGGGATCATCCATTTGTCATTTTTGTCGTAAGTGTTTTA
TTTATATTTTGGAATTATACTTATAAATAATAATTTTATTAGACCAAAAT
CCTAAATTATTTTATTGAATCATAGAGTCAGATCTAAAATTAATTTATTA
AATTAAAAAATAATACACAAAATAGGTAATTTTTTTCAATAATTCAAATA
TTAACCTCCCCCTCCCCCTATAAACCGATAAAGATTGATTTTAGAGCGGA
AAACTCCATTCAAATCCAAATAAATAACAAAATATTAAGGATATGAACTA
CTTAAGAATTGAGTGCAACAAATGTTTGTGAGCATTACTTTTGATGTAAT
TTAACTTATTTATACTATATTCCAGAATATATTTATGACTCAAATCAAAA
AATCTGTAGACTTGAAACAGATCTGATAAAAATATTTATGTAATTGACCT
TTAGAGAAAATATTTGAGACTCTACTCGATACTCAATACCAACACTTTGG
AACCTACATGAAAAGGAACATAGAATATAATGACTTTGTCCCTACACTAG
CTAATATCTAAAAGTAGATAATTAAAAATATCAAATTCAGTAAATTTGTT
TTAACTTTGAGCCCTGCTTTCAATTTAATTATATTCATTAATCATTGCTA
ATATCTAAAATATCTGTATCAAATAACAACTATACATGGTATAATATACT
TATATAATTATTTCATGTCATAAAATATGAGAAGGAGTAGACATAATCTC
ATTATTGATTATACAATTTGTAACTAGCAATGACTAAAAAAATTGATTTT
TCCTTGTGATTTTAATTTCAAATCTAATTAATTTAACTTTCCAAGCCGAA
AGTAATTCCCTAAGCTCTTTGATATCCAAGTAGAACGGATTTAATTAGCT
CACTTCTCTACATCAGTATCAAATTTCTTCTGCAGTATACCTGATTTTTT
TAATGTATATTTTGATTTCCGATAAATATTCAAATCACTTATTTTAAAAA
ATATTGCAAGTACACATATTTTATATATATATAGATAGATAAATAAATAT
CTTCCCATATTTATAACTCACATAATATATACTAACACTATTTATTTTTT
CAAGCAATTCATCGTATATATCCTAGGCCAATATCCATACCCGTACAAAA
AACAATTCATCACCACCATGGAATCCTAATGCCGTCTGAAGGATCTGGAA
GCAATCCCTCTGTCATAGAGAATGAAACCTCAATAAATATGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGAAGAACTATTAATTA
AATTTTATAGCAGAAAACATTAATTGAGACTCTTTTCCAACTTTAAAAAT
TACATCAATCATGTGTTGAGGGCTGTTTCAATCTATCTATATATAATGTA
ATAAATTTGCCTTTCATTGAATTTAGTGGTATATGGAGGGATCAGCAACC
TATGGCACGCGGAGGCATATTCACTAGCACGCGCAAATTAGAATATATTC
CCGAAGTTTGTCTATGTTTTTTACCATGATGGTTGATACTGGCCTTCCCC
TGGAATATGTTTTAAGCTAGATGTGAATACGATAGACATACGTTTAGATA
GTGTTGTGTCAGTCCGTACATAAGGCTGAAGACTGCAGTTCCGTCTAGTT
CAGTCCTAAAACATAAAAATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCATTACAGACTGACACACTAAGTATAGATAGTTATAAAAAACT
ATTTTAGATAGAATAACTCAAAGGAGGTGGCTTCTTTTGAAATGGTACCC
CTTCAAAGTACTCAAAAAGTATATTTTGTTTTATAGTATTAGAT
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