Show in GBrowse|https://licebase.org/fgb2/gbrowse/lsalmonis/?q=lcl|LsalIR8a.2-Anna|LsalIR8a.2
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Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image |
Title |
Gene or target symbol |
Sex/Stage |
Phenotype |
Date |
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RNA_AE F255 |
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both- preadult II male
- preadult I and II female
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-Missing- -Missing- |
22.02.2016 - 10:01 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
LSalAtl2s452 | supercontig | LSalAtl2s452:620907..625580 - |
Analyses
This mRNA is derived from or has results from the following analyses
Analysis Name | Date Performed |
race | 2015-04-07 .848711 |
Properties
Property Name | Value |
Indels | 55 |
Unknowns | 0 |
Matches | 2170 |
Identity | 86.3 |
Coverage | 99.7 |
Mismatches | 290 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA from alignment at LSalAtl2s452:620907..625580- Legend: exonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1 ID=lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1|Name=lcl|LsalIR8a.2-Anna|LsalIR8a.2|organism=Lepeophtheirus salmonis|type=mRNA|length=4674bp|location=Sequence derived from alignment at LSalAtl2s452:620907..625580- (Lepeophtheirus salmonis) CTTTTTATCAGGGATCCTATGTCTATTTATACAAGGAATTCAAGGGAGTG
GACACATACTACTCTTGATTGAAGAGGAGCAAGGCGATGTGGCAGCAAGT
TTTGAAATTTCACTTTCAAAGGCATTTGATCTTTTTTTCATAACATTCAC
AATTGACTAAAAAAAATATATGTTACAGATACCAAACTTGAAAGTCTCCA
GATTATCCCTTATTCGGGATTTACAGAAAGAACTCTACAATTCCACTTGT
GATCGCTTTTCCTGAAAGGGAGTCTAGGGGATTGTTGACACTACTTACGG
TTATTCTTGGAAGTGACTTTTGAAGGAGGCCTCTGATTTGAAAATCCCAT
ATCTTAAGGTCGACGTTTTTAACTCAAAACTCCTTTTGGTGAGTGTTCTT
TAAATATAATTTATACATATATATGTACATGAGCTTAACTTGAGCTTGAC
AATTAAGCCTGCTATAAAATATATAAACAAACGAAAGGGTGATACTGCTA
TACAACTCTCAGATGGGAATTTGGTTCTCCATGAAAGTGTCTTTACTTTT
CTGGAAAAAATCCATGATTAAAAATCGTGGTTGCGAATGTGGATGAGAAG
AATAAATTGAATCACGTCAAATTGATTCGACCTTTACCTCAGTATTCATT
GTACTTAATTGTAATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATACATTCGTTATAC
CCTCAAAAATCATAATAAAGCAGGCAGATGATAATCACATCAGTATTTTA
AACAATGATACCATATGTCTTTTTTTCCCCTTCTCCTAGCACGCGTTTTT
CTCTACAATATTATCAACTATATCTATAAGATATGCTAAAAATGGAGGGT
AAGGGAGCTCAAGTTCCCTCAAAAAAGGAACAGCGACGCAACTGCCTACC
GCATTTATTGTTCATATAGCCAAAAATTTTATTTTACTCTTATTAGCCCT
GTTTGACCTCACCAAAGAAAATGTTAATTTAGATAGGAAATAAAATCTTC
AAAACTCCTGATACTTTATGATGTAATGTATTGAAGTAGTCTGTATAAAA
AGTGCTACTTATTTTCTTTTCCTTGAGTTTCAGAAACTTTCAGACGGGTG
ATTTTTTCTGTTAATATTTTTTAAGCAAATATTGCCGAAAAGAAAATATA
ATCAATAAAATAAATTGTATTAAACTTATAGTATGAGCAACATTTAAGTA
TTTAAAAGGAATATTTGACAATCGAGAGTTATGAGCCGAAAGCCTTTTAA
CCTCACTATTTTTTTTATCCCACCCTAGCCCACCAATTTTGTCTGCAAAA
TTTTATGATAACCTATATAGGTTTAGTTGTTTTTGTAGTTTCAAAATTCA
ATCCTTTTTAAAATCAATTAGATTATTTAATATTGTTTGTATTAACGAAA
TTATCTTTATTTGGTGCACTTTTCTCTTCTTGAACATGGTCAAATTTGTA
TCTATATTATGTTTCAATTGCGTTTAAAAATAAAAATGTCAGCAAATATT
GATAAATTTACACTTTAAGCAAGAGTTTAAGAGCCAACGATTACCACTTA
ATGTTGTACATATGTTACAATTTTTTTACAAGGACTGTCAGTACTACGAG
TAGAAATAATTAAAAAAGTAAAAATAATGTAAATTGTTAAGTTTTTGGAT
AAAAAGAACAAAAAACTCTATACCGGATATAACTTTATATGTTTTTAGCA
TTGTTATGCAGGATTAAACTGAACCGAACTGAGACTGAACTAGAAATAAC
GAAATAAGCACCACAACAACACTATGTATAATTTACACATCTTCTTATAA
GTAGATTATGAAAAATGACTCCCACACAATTTTTTTTTTCGAATAGTTCC
TACTTACGAAGATAGCAAGGATTTTCGAGATATCCTAATTTCCGCAATGG
GAGAATATCTTCAAAATATAATAAAAACAGATTTACAAATAGTTCAAAAG
AAATGCTCATTTATGGATATGAGTCGAGATGAGAACGAGAAGAATATTGA
TTCGGATCTTATTCATCCTTCGTTAGTCCAGTCTTCTTCTTCAGGCTCTT
TGCCTGTTTTTTCCTAAATGGATAATTTTCTATCTTATTCATTGGAAGCT
CAAATCGTGTTGAAAAGAATGAATAGTTCTATCATAGTAGGTGAAATGAA
AATGAAGAGAGGTTGGGTTTGGAAGGGCACAACAGACTTGGTGAATCTAA
AGAGGAGTTTTAGAATTGGGTTATTATATCTCCTCCTTGGCTGTTCTTTT
AAAAAGACAAAAGCGAGAATTATGTCCAGGTATGAATTATAAGATTTATT
AAAAATTTCCTCAACTTATTATCATTCCTTGCAAGGCCCAAAGACAGGAG
GGCAAATATTAAAGGTATATTTGATAGAATTCATGACAAATTGGCAGAAA
ATAGGAATTTTGAGTACAAATTGGTTTTCTCAAAGAGGTATGAAGAAGAG
TATGGACAATTACGTATATTATTTACATCGTATTAATTGCAATTATTTAA
TTGAAGTAACCCAGAGTCTGAGACATGGAGTGGACTTATTGGCCTCTTAA
TCAAGGGAAATATAGATATGGTCGCTTCAGATCTAACAACAATCCTGGAA
CATGAGGAAGTAATTGACTTTGTTTCTCCTAATTACTATCAAAACGGATA
CGCCATTATTTTTCGGAAGCCTGTTCGAGAGTGGTCCTTTTTTAAGTTTA
TGGAAGTTCTAAAAAGTGAAGTATGGGTCTCTATTCTAGGTGGTCTTATT
TAAACAGCGTTTCTCCTTTGGTTCCTTGAAAAATACTCCCCCTTTTCTGC
TCGAAACAATTTGGTCAAATACAATGAGCCTATACGAGTATTTGATCTTA
GAGAATCCTTTTGGTTTGCAAAAACCTCATTTACACCTCTTGGAGGAGGT
CAGGATTTGTTTCATGTATGTATGTATCTATGTCAAAACTTAACTTGAAT
TTAATCAGGAGATCCACCAAAAAATATATCCGGACAAATTCAATCATCTA
CCTATTAGCTCTTTGTCGTTCTAATCTTTGCAACTTTTACTGCAAATCTA
GCAGCTTATTTAATTGTTGAAAGAATGAAAACATCAGTCAAAAATTTGGA
CGAACTTGTACAGCAATCCGAAATTAACTTTTCTCTAATGAGGAACTCAA
CCATAAAGGGTTATTTTTTGAATTTGGCAAAGGCTGAGGATGATATTTAT
ATGGCATGGAAGGGCATTTCCTTGAACAGTAAAAAATATAGTTATTCACA
AGTTTGGAACTATCCAGTGAAGCAAAAATTTCAACAACTTTTAGAAGCAA
TAGAGGGAGCTGGTACAGTTAGTAGCGAGGATGAAGGATTTAAAAGGGCT
TTAAAGGATTAGAATGGACTTTTTGCATTCATCCATGATGTGAACAACGT
AAATATTCAACTTTCTCCCCCTCAATTGAATAATAATTGTCATTCTATCA
CCCACCGGATAGGTCCGATATCAATTTTATTCAAATTGCAGTTACTCCTC
CATAAGTGAGACCTTTGGTGAACGTTCCCTAGCAAAAGCTATTCGTCCAA
GAAGTACTTTATAACGAGAGCTCTCAGAGGCAACAACTCTTCTACAAAAT
ACTAATTTTTTCAATTACCTCGAAAATAAATATTGGAAATCCTCTTGGAG
AGATAAATGTGAACCTGAGAAGGACTCTGAAGGGATTACATTACCATCCT
TGGGAGGTGCTTCTATATGTACTAGGATTGGAATCATCATTTCCATCATT
GTTCTGGTATACAAAATGATAGAGAAACGTCGGAAGGAGAAAAATGCTAT
CTATGGTATCCCGATACGAGTGAAAGAACAAATATATACAATCTGTAAAA
ATATCAACAAAGATCCGATATTGA back to top
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