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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 297..341 |
None | No IPR available | PFAM | PF13894 | zf-C2H2_4 | coord: 278..298 e-value: 0.44 score: 10.8 coord: 156..178 e-value: 0.08 score: 13.2 |
None | No IPR available | PFAM | PF13465 | zf-H2C2_2 | coord: 233..256 e-value: 5.7E-6 score: 26.2 coord: 205..229 e-value: 1.4E-4 score: 21.9 |
None | No IPR available | PANTHER | PTHR11389 | ZINC FINGER PROTEIN | coord: 16..468 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 417..465 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 227..286 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 190..240 |
IPR015880 | Zinc finger, C2H2-like | SMART | SM00355 | ZnF_C2H2 | coord: 384..406 e-value: 30.0 score: 9.1 coord: 445..468 e-value: 0.09 score: 21.9 coord: 417..439 e-value: 1.2 score: 18.2 coord: 277..300 e-value: 0.24 score: 20.5 coord: 218..240 e-value: 0.0027 score: 26.9 coord: 190..212 e-value: 0.0012 score: 28.1 coord: 246..269 e-value: 7.7E-4 score: 28.8 coord: 156..178 e-value: 0.13 score: 21.3 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 222..246 e-value: 7.1E-10 score: 38.3 coord: 190..221 e-value: 2.8E-11 score: 42.8 coord: 418..445 e-value: 1.2E-6 score: 27.9 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 446..465 e-value: 6.9E-4 score: 18.9 coord: 247..266 e-value: 1.5E-8 score: 33.8 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 154..182 e-value: 3.0E-4 score: 19.8 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 447..468 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 386..406 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 220..240 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 419..439 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 158..178 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 279..300 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 192..212 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 248..269 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 190..217 score: 15.583 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 218..245 score: 13.921 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 246..269 score: 10.97 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 417..444 score: 11.552 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 445..468 score: 9.328 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 156..183 score: 10.637 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000000107 ID=EMLSAP00000000107|Name=EMLSAP00000000107|organism=Lepeophtheirus salmonis|type=polypeptide|length=751bp MRKREGKRRREKKRKENQGSEMESSQPPNRKKEVFQWSTPADEFADDVGS DVEEEVVAXVDVEEEGEGEEEEEERLALDATCGSDSDDDPLRHEMPHEED VEEEPMDEESFNVDQETGGIIINLGVEEADKFSALENLGKRRGRKVGEIL KPKHKYPCPKCNKEWNWPWELRRHIVTHYREKERQETSAYKCETCGKGFQ WKRDLAQHRRLHTGEKLLICSVCQKKFTTRQALLHHVVVHTGEKPFQCAF CGNKFTQPANLRTHMKKKHPEMNCKGNKCPHCGEAFTSIVAVHQHVLDDH QNLVAEARENLELDRIKKEAEKIRKEKEKLEKRKIRIKEKVMNIAHGDRP YKRVNEWEMEYEFQLGEGLVRGVDWDRTPSNGELSCDQCDRKFGWRYEVM FHGLCHLVDEEGNAKNKVCPECDTAFKVPIGLKHHLVLHTGETPFLCLHC WKSFASHIDLKLHIRKEHLLHLLPTTGSSKSKKGGSDNASDEKHGIKKED KKSAVRLAKANSSLDSSVTVVVENEEGGNNVSVSGTGDSQTQETETIVIE GEQISNDQDMIVIVQSGEFEESQGLIVVDPSQIRQINGSRMEVEHSSNAE SERKESSNPTSLNQFVKLQVSEGCDETTVVVSQEETAQDESDESTYVVVD SNNRIHIQSQKDRGAPPTEEQILSSTEDSKIVLEREEMMSQESNEKNTFS SEAGGDAEPSVATDDSDNVPSSEQHSNSDSDVHTETIIEDTKVVVLDKDN A back to top
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