|
|
Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001632 | G-protein, beta subunit | PRINTS | PR00319 | GPROTEINB | coord: 149..166
score: 52.36
coord: 112..126
score: 68.69
coord: 93..109
score: 40.64
coord: 131..146
score: 55.11 |
| IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 244..258
score: 37.0
coord: 112..126
score: 41.47
coord: 286..300
score: 34.8 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 260..299
e-value: 5.0E-11
score: 52.6
coord: 176..214
e-value: 0.016
score: 24.4
coord: 86..125
e-value: 3.9E-10
score: 49.7
coord: 346..385
e-value: 0.04
score: 23.1
coord: 128..167
e-value: 1.8
score: 15.4
coord: 217..257
e-value: 2.0E-5
score: 34.1
coord: 302..343
e-value: 0.2
score: 20.7 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 351..384
e-value: 1.3E-4
score: 21.6
coord: 179..214
e-value: 0.0038
score: 16.9
coord: 316..343
e-value: 0.042
score: 13.6
coord: 219..257
e-value: 3.6E-5
score: 23.3
coord: 89..125
e-value: 1.9E-10
score: 40.0
coord: 262..299
e-value: 7.1E-11
score: 41.4 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 353..386
score: 11.745 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 183..223
score: 8.938 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 224..266
score: 12.681 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 93..125
score: 14.218 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 267..308
score: 15.454 |
| IPR016346 | Guanine nucleotide-binding protein, beta subunit | PIRSF | PIRSF002394 | GNBP_B | coord: 36..385
e-value: 4.6E-155
score: 524.3 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 158..385
e-value: 1.2E-52
score: 178.0 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 89..157
e-value: 1.2E-17
score: 63.0 |
| None | No IPR available | PANTHER | PTHR19850 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA (G PROTEIN BETA) | coord: 18..386 |
| None | No IPR available | PANTHER | PTHR19850:SF17 | SUBFAMILY NOT NAMED | coord: 18..386 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 112..126 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 93..386
score: 54.47 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 79..384 |
| IPR000772 | Ricin B lectin domain | PROSITE | PS50231 | RICIN_B_LECTIN | coord: 241..386
score: 9.092 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000000110 ID=EMLSAP00000000110|Name=EMLSAP00000000110|organism=Lepeophtheirus salmonis|type=polypeptide|length=386bp
KWKFSSVLLFVSSQKGSNSITQIVQSSTWILKAFRNSLLFNMPKPDEETE
ALKKELGDLVTKCREEQKKFADTLDFGAASNIPKVKPGCKKSLKGHINKV
TCIHFSGDSRHLVSGSLDGKLIVWDCWTSNKTMVIPLRSAWVMTSSFAAS
GNLVGCGGMDNMLTIYDINNRDANGLAKILYEFMGYEGFLSSCKFIDDNR
VVTGSGDMKIMEWDLTTGKKTQDIDGHNGDIAGLSLKPGESDVFVTSSVD
RTCRIWDIRTSSCQQIFWGHDADVNSVYFHPCGNHFVTCSEDKTARLWDI
RSDQEIAVYXPPTPNSNFTCVATTVSGRILLCSSDDASIHMWDLVSKAHL
GNLCGHDNRITXLSXAPSGLGIASSSWDTSVKCWAL back to top
|
