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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000504 | RNA recognition motif domain | SMART | SM00360 | RRM | coord: 201..256 e-value: 1.4E-4 score: 31.2 coord: 16..88 e-value: 2.6E-21 score: 86.8 coord: 110..182 e-value: 4.4E-16 score: 69.4 |
IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 111..165 e-value: 1.0E-11 score: 44.1 coord: 17..82 e-value: 1.1E-16 score: 60.1 |
IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 109..186 score: 14.164 |
IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 15..92 score: 15.784 |
IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 200..260 score: 10.121 |
IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 223..274 e-value: 1.3E-5 score: 24.6 coord: 3..97 e-value: 3.4E-24 score: 84.7 coord: 181..222 e-value: 9.7E-6 score: 24.9 coord: 99..180 e-value: 1.4E-19 score: 69.8 |
None | No IPR available | PANTHER | PTHR24012 | FAMILY NOT NAMED | coord: 5..408 |
None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 9..98 |
None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 192..290 |
None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 108..222 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000000160 ID=EMLSAP00000000160|Name=EMLSAP00000000160|organism=Lepeophtheirus salmonis|type=polypeptide|length=410bp MPHSNNETSGPEKERKLFLGGLNYSTTEDGLKKYFEKYGELVDIVVMXFP DTRRSRGFGFVTFAQVDQAXACFEERPHTIDSTTIETKRATPKEEMESAD EGSQPEVMRKLFIGGLDYSTDDETLKAFFEQFGELVDCVVMKFRDTKRSR GFGFXXYAHXDXVDXXXAARPHTIDGAKVETKRATPREDVAKPESSSSVK KIFIGGLKDGIEDEDLKDYFSKKRGFGFVEFDDYDPVDKIVLIGKHYLND WRIDVKKAISRSDLNGGGGGGGGRREPDRGPRGRGPGGSRGQPAPWGNSG GNGFSGGYDNYGNGGGGNGGGGGWGNSGGGQPSPWASSNNNGGGWDDHHG GWGGGNNGWGDNFGNRGNSGGPMRNSIVGSGRNAPYSMGRGGFGGGGGGG YNRXSGGGRW back to top
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