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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR003954 | RNA recognition motif domain, eukaryote | SMART | SM00361 | RRM_1 | coord: 300..374 e-value: 0.13 score: 21.3 coord: 113..185 e-value: 3.5E-4 score: 29.9 coord: 450..525 e-value: 13.0 score: 2.8 |
IPR000504 | RNA recognition motif domain | SMART | SM00360 | RRM | coord: 300..374 e-value: 1.6E-14 score: 64.2 coord: 113..185 e-value: 9.4E-20 score: 81.6 coord: 450..529 e-value: 2.9E-10 score: 50.1 coord: 10..78 e-value: 0.012 score: 23.7 |
IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 114..182 e-value: 2.3E-16 score: 59.0 coord: 451..515 e-value: 1.2E-11 score: 43.8 |
IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 299..378 score: 14.607 |
IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 449..550 score: 12.714 |
IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 112..189 score: 16.313 |
None | No IPR available | PFAM | PF14259 | RRM_6 | coord: 301..372 e-value: 3.3E-10 score: 39.6 |
None | No IPR available | PANTHER | PTHR24012:SF233 | SUBFAMILY NOT NAMED | coord: 73..521 |
None | No IPR available | PANTHER | PTHR24012 | FAMILY NOT NAMED | coord: 73..521 |
None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 108..194 |
None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 5..83 |
None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 297..388 coord: 446..515 |
IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 104..199 e-value: 7.6E-25 score: 86.4 |
IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 268..381 e-value: 2.8E-17 score: 62.3 coord: 4..84 e-value: 3.6E-5 score: 23.1 |
IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 448..518 e-value: 7.5E-15 score: 54.5 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000001139 ID=EMLSAP00000001139|Name=EMLSAP00000001139|organism=Lepeophtheirus salmonis|type=polypeptide|length=700bp MSDSKEHAYTLFVSKIPNYTKEEDFQALFPESYRCFITKSSFSKKFRVGY VYYSSSELYQKALQSKYQLPNGPVLTVKPAHDKASSLSXKKEALKRXSQI RFDRKVAKEKQSRIILRNLSFKASEEDIKTVFSKYGALKHINILTKPDGK RVGCAFLQYENRPQAAKAIKAANGSNFMGRPVALDWAVPKKDFQATNSKT EVEVKNKDVDHLMSAEEDNGFGRDDKNGSEDDEDGFDGEDENMSVDGEEK YEDGFDGEDENMSVDGEEKYEDDSERDSEDDDKDSRPKWESGHDVDEGRT VFIRNLSFDSLEEDLASLIEERYGEVVFAKFVMDKIKEHPKGTAFVKFVQ TKSAERAVNDKEPLILDDRTVYLCMAMKKSDADSINKKKEMDKKLGKDKR NLHLAREGLIREGTRXAVDVSKTDLHLRTKIQKWKTNMLKDLSCFVSPVR LCVRNIPEDFNDKRLRNLFSKYGVLSEAKVIRDEKMNPAKGNAELGFVTF KEHEHALNALRAVNNNPTIFRKDCRPIVEFSIENLKAIKAREKRLQKSRE NNPNFKKINTSTQKTKPAQTLNKKMEDSGETVHGFMGXKNDPKQKNLXSH IGPKVRSARPKISRKDLKKGAKRKVLEKKIRTVPIQHKKDKTDHEENNPE KKKKNKKKVKPETLKELKEEKSFNSLVQNYKTKLLDNYEPMAKRRKWFAE back to top
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