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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR002589 | Macro domain | SMART | SM00506 | A1pp | coord: 800..924
e-value: 0.0026
score: 21.9 |
| IPR002589 | Macro domain | PFAM | PF01661 | Macro | coord: 827..921
e-value: 6.2E-7
score: 29.2 |
| IPR002589 | Macro domain | PROSITE | PS51154 | MACRO | coord: 788..956
score: 12.995 |
| IPR001357 | BRCT domain | SMART | SM00292 | BRCT | coord: 982..1058
e-value: 8.9E-5
score: 31.9 |
| IPR001357 | BRCT domain | GENE3D | 3.40.50.10190 | | coord: 975..1062
e-value: 1.9E-11
score: 43.3 |
| IPR001357 | BRCT domain | PROSITE | PS50172 | BRCT | coord: 980..1068
score: 16.678 |
| IPR001357 | BRCT domain | SUPERFAMILY | 52113 | BRCT domain | coord: 982..1068 |
| IPR001510 | Zinc finger, PARP-type | PFAM | PF00645 | zf-PARP | coord: 10..91
e-value: 1.7E-14
score: 53.7 |
| IPR001510 | Zinc finger, PARP-type | GENE3D | 3.30.1740.10 | | coord: 2..109
e-value: 3.9E-21
score: 74.7 |
| IPR001510 | Zinc finger, PARP-type | PROSITE | PS50064 | PARP_ZN_FINGER_2 | coord: 6..96
score: 20.687 |
| None | No IPR available | GENE3D | 3.30.470.30 | | coord: 393..511
e-value: 3.3E-24
score: 84.5 |
| None | No IPR available | GENE3D | 3.30.1490.70 | | coord: 368..392
e-value: 2.0E-19
score: 68.7
coord: 514..564
e-value: 2.0E-19
score: 68.7 |
| None | No IPR available | PANTHER | PTHR10459:SF11 | DNA LIGASE III | coord: 1..1061 |
| None | No IPR available | PANTHER | PTHR10459 | DNA LIGASE | coord: 1..1061 |
| None | No IPR available | SUPERFAMILY | 52949 | Macro domain-like | coord: 803..939 |
| None | No IPR available | SUPERFAMILY | 56091 | DNA ligase/mRNA capping enzyme, catalytic domain | coord: 317..559 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 4..107 |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal | PFAM | PF04675 | DNA_ligase_A_N | coord: 151..320
e-value: 3.5E-38
score: 131.0 |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal | GENE3D | 1.10.3260.10 | | coord: 148..318
e-value: 5.6E-11
score: 41.7 |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal | SUPERFAMILY | 117018 | ATP-dependent DNA ligase DNA-binding domain | coord: 149..375 |
| IPR012340 | Nucleic acid-binding, OB-fold | GENE3D | 2.40.50.140 | | coord: 569..714
e-value: 2.4E-39
score: 134.4 |
| IPR012340 | Nucleic acid-binding, OB-fold | SUPERFAMILY | 50249 | Nucleic acid-binding proteins | coord: 569..714 |
| IPR000977 | DNA ligase, ATP-dependent | TIGRFAM | TIGR00574 | TIGR00574 | coord: 204..713
e-value: 2.2E-140
score: 466.6 |
| IPR012310 | DNA ligase, ATP-dependent, central | PFAM | PF01068 | DNA_ligase_A_M | coord: 364..558
e-value: 3.5E-59
score: 199.4 |
| IPR012310 | DNA ligase, ATP-dependent, central | PROSITE | PS50160 | DNA_LIGASE_A3 | coord: 464..598
score: 40.985 |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal | PFAM | PF04679 | DNA_ligase_A_C | coord: 586..697
e-value: 9.1E-17
score: 61.1 |
| IPR016059 | DNA ligase, ATP-dependent, conserved site | PROSITE | PS00333 | DNA_LIGASE_A2 | coord: 536..558 |
| IPR016059 | DNA ligase, ATP-dependent, conserved site | PROSITE | PS00697 | DNA_LIGASE_A1 | coord: 387..395 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000001767 ID=EMLSAP00000001767|Name=EMLSAP00000001767|organism=Lepeophtheirus salmonis|type=polypeptide|length=1068bp
MTDNKYSIDYAKRPAGCKKCKEKMLKGALRIAKITAXPFSDDGEMKLFHH
PACIFQTFQRVRPNTKIIEEPGDLEGWESVTAEDKEMVLTLIREAAKXSS
DNKASKKKAPTPKKKTPSKEKSPSLLEGSPSPMKEDNERPKXGDPACKDN
SFSEFIRLCNKIADEPSYNAKTEIMAKFFRHNKFEGDLHVWIRLLLPGVV
KRVYNLQSKTLVKIYSKIFEESEDEMLEDLEAGDVAGTIATFFEKSESFS
PLKKSSLNVFEVDSFLKGLCGITTEDKQMYELKKITKKCTLEDLTFIIRL
IKGDLRMQAGSKPVLTALHPDAYEAFNSSRNVDKVIESVLTLRSGGDPKG
TLNVGATLMNPIQPMLAQACKSVDMAFKKFPKGMYSEIKYDGERVQLHKR
GKEFAYFSRSLKPVMAHKVKIFKEYIPEAFPDGSDLILDAEVLMVDNKTG
DPLPFGSLGVHKGSGFKDATPCLFIFDCIYYNGENLMDKPIHDRRKLLSQ
HMVEVGNYIKFSEMKVIKKKSELGEMIQDVLKKGLEGLVLKDINSTYEPG
KRHWLKVKKDYLNDGAMADTADLVVLGGWFGTGQKGGIVSIFLMGCYDTS
TKKWMTVTKVHGGFDDATLEDLQDKIVPIMKKIKGDYDSVPSWLKCNRGV
VPDFIVNDPKVMPVWEITGAEFSKSDIHTANGISIRFPRVTKQRKDKNWK
TATNLEELIALYKTSKENVDFDIDFEGKNDSINDNNEDIDGMKENSDSSP
PKKIKLESPNKMFSKGRLLDPRERSPVKVTLGKSNRSFDKIEISNKYGLD
MFVKQGDIFKDSPRNASLAHCISLDYSLGKGIAKTFRQKFNCFNQLSKVK
SVIGGLAVLKDGDRYIYNLVTKAKYSDKPTYDNLKKSLEAMRLHAEEKNV
SEIAMPKIGCGLDGLQWNAVRTLIKNVFLKTEITLTIFSLQDESPSILSE
VSISKETIEKRQLTQEVSNNDLAPPSKKLSLEDPFIGTKILLKPGLSENN
DLLTRHIITFGGKIVEDFEEDKATHIVYPNKSVKLKKKFSSKGVCVKEDW
IVDSIKQKRXLNTKKYRL back to top
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