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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 517..559
e-value: 0.0046
score: 26.2
coord: 466..504
e-value: 3.0
score: 14.0
coord: 567..609
e-value: 1.4
score: 16.0
coord: 741..780
e-value: 1.3
score: 16.3
coord: 695..734
e-value: 1.7E-4
score: 30.9
coord: 653..692
e-value: 0.0061
score: 25.8
coord: 612..650
e-value: 0.0018
score: 27.5 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 662..692
e-value: 0.0041
score: 16.8
coord: 699..732
e-value: 3.2E-5
score: 23.5
coord: 574..606
e-value: 0.018
score: 14.7
coord: 617..650
e-value: 0.0011
score: 18.6
coord: 527..557
e-value: 1.6E-5
score: 24.5 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 619..659
score: 10.642 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 527..568
score: 8.537 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 660..701
score: 8.637 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 702..736
score: 9.305 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 748..784
score: 9.305 |
| IPR006595 | CTLH, C-terminal LisH motif | SMART | SM00668 | CTLH | coord: 49..106
e-value: 1.1E-7
score: 41.5 |
| IPR006595 | CTLH, C-terminal LisH motif | PROSITE | PS50897 | CTLH | coord: 49..106
score: 11.024 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 478..781
e-value: 3.3E-55
score: 186.5 |
| None | No IPR available | PANTHER | PTHR19863 | FAMILY NOT NAMED | coord: 3..784 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 527..784
score: 32.825 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 477..781 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000001780 ID=EMLSAP00000001780|Name=EMLSAP00000001780|organism=Lepeophtheirus salmonis|type=polypeptide|length=784bp
MASSSSATTHLVLKEEDVIKLACEFXGNREMFISQVTVERESGVINGNYS
DDMLFLRQLILDGQWDDVMEFIQPLASLSSFNYKLFQFMILKAKYIXLLC
IKSESLILPNPETAVDAXVEVLNEIEKVAPTKEVYSNLCLLLTVNKLSEH
PDFKTWNPNKGRNACFKEIKPLCEELLGGSSENKKDPSRSFTEGPHSATN
DRLLQLLIKGILYESCVDYCQQKATGPKKPGGQIQFTELLSHSDFSDSDL
SLLSWLQXIPSETFSCPFEQRSLNVDVERIKAPVLETNWTEHMLVTPIKP
NIFPHSAMPHRSKGAEIMTKSLNIGALSAKGGNRCIGENGVHRNNPSGNS
MVDMSKSFASFHLTGKKLMDTSVDQLFLKEELSATKASQIPQSQLSKETD
TSKMEYVSKTRLHHSSKPDENTPTIPESHALENNKPQQPSSIENTNQNNN
NVKAAPSSSSSSSTSRFLNVTTIEDVQALRCAEFHPSGKIYAVGSNSKTL
RICQYPNIDELTESHETNQPVVLFKRTKHHKGSXYCLSWNXSGNLXATGS
NDKTVKLMKFNTDTCSLEGNEVELTMHDGTIRDCTFLDDSKSSYLVSAGA
GDCKIYLTDCTIASPFHALVGHRDYILSLYTWGGALFVSGSADKTVRFWD
LRSRGCVNMVQYGGSSVASCSVDPSGRLLVTGHEDSSIILYDIRGCRTVQ
SFKPHNSDVRSVRFSPSAFYLLSTGYDNKVILTDLQGDLTSPLPSVVVAT
HSDKVISGRWHPTDFSFLSSSADKXATLWALPPL back to top
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