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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000856 | Opsin RH3/RH4 | PRINTS | PR00577 | OPSINRH3RH4 | coord: 233..250 score: 40.97 coord: 268..282 score: 68.33 coord: 345..363 score: 30.92 |
IPR001760 | Opsin | PRINTS | PR00238 | OPSIN | coord: 316..328 score: 38.09 coord: 193..205 score: 28.58 coord: 77..89 score: 47.65 |
IPR000276 | G protein-coupled receptor, rhodopsin-like | PRINTS | PR00237 | GPCRRHODOPSN | coord: 221..244 score: 21.92 coord: 89..110 score: 28.71 coord: 135..157 score: 27.73 coord: 319..345 score: 27.33 coord: 56..80 score: 24.76 coord: 281..305 score: 19.64 coord: 170..191 score: 22.32 |
IPR000276 | G protein-coupled receptor, rhodopsin-like | PFAM | PF00001 | 7tm_1 | coord: 71..337 e-value: 4.1E-48 score: 163.6 |
None | No IPR available | GENE3D | 1.20.1070.10 | | coord: 40..374 e-value: 1.5E-71 score: 240.2 |
None | No IPR available | PANTHER | PTHR24240 | OPSIN | coord: 4..373 |
None | No IPR available | PANTHER | PTHR24240:SF11 | OPSIN | coord: 4..373 |
None | No IPR available | SUPERFAMILY | 81321 | Family A G protein-coupled receptor-like | coord: 38..360 |
None | No IPR available | TMHMM | TMhelix | | coord: 92..114 |
None | No IPR available | TMHMM | TMhelix | | coord: 289..308 |
None | No IPR available | TMHMM | TMhelix | | coord: 57..79 |
None | No IPR available | TMHMM | TMhelix | | coord: 218..240 |
None | No IPR available | TMHMM | TMhelix | | coord: 172..194 |
None | No IPR available | TMHMM | TMhelix | | coord: 129..151 |
IPR027430 | Visual pigments (opsins) retinal binding site | PROSITE | PS00238 | OPSIN | coord: 321..337 |
IPR017452 | GPCR, rhodopsin-like, 7TM | PROSITE | PS50262 | G_PROTEIN_RECEP_F1_2 | coord: 71..337 score: 38.687 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000002839 ID=EMLSAP00000002839|Name=EMLSAP00000002839|organism=Lepeophtheirus salmonis|type=polypeptide|length=377bp MADGSSIIAGLYMDETYHKMYSSSSRLTDGVPEELREVIHHHWDQFSPVN PLVTHFFAVFYFFLCSASMFGNLLVMYIFIKVKSLRTPSNMFVVNLALSD FCMILTQAVPVIFNAFMQRYWAWGVFGCKLYGFLGAVFGVESILTMVIIG YDRYNVIVKGMNGTRITPMRAFILLLFIWFYAIGVSALALFNVWGGFMAE GLLLTCSYDYLSEDWNNFTYIIFTIIFLYVIPLSMVFFFYSSIVKAVWSH ELALKKQAKKMNVDSLRSNTDSNAESAEIRIAKVAITNVSLWAGIWXPYX LVVLXAVLGSKSSITPLVSQLPSFIAKTASCINPLVYAVSHPKYREALMT EVPCLGIQEQGAPKKGGEDQSEKQTTA back to top
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