EMLSAP00000002839, EMLSAP00000002839 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000002839
Unique NameEMLSAP00000002839
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length377
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000856Opsin RH3/RH4PRINTSPR00577OPSINRH3RH4coord: 233..250
score: 40.97
coord: 268..282
score: 68.33
coord: 345..363
score: 30.92
IPR001760OpsinPRINTSPR00238OPSINcoord: 316..328
score: 38.09
coord: 193..205
score: 28.58
coord: 77..89
score: 47.65
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 221..244
score: 21.92
coord: 89..110
score: 28.71
coord: 135..157
score: 27.73
coord: 319..345
score: 27.33
coord: 56..80
score: 24.76
coord: 281..305
score: 19.64
coord: 170..191
score: 22.32
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 71..337
e-value: 4.1E-48
score: 163.6
NoneNo IPR availableGENE3D1.20.1070.10coord: 40..374
e-value: 1.5E-71
score: 240.2
NoneNo IPR availablePANTHERPTHR24240OPSINcoord: 4..373
NoneNo IPR availablePANTHERPTHR24240:SF11OPSINcoord: 4..373
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 38..360
NoneNo IPR availableTMHMMTMhelixcoord: 92..114
NoneNo IPR availableTMHMMTMhelixcoord: 289..308
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 218..240
NoneNo IPR availableTMHMMTMhelixcoord: 172..194
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
IPR027430Visual pigments (opsins) retinal binding sitePROSITEPS00238OPSINcoord: 321..337
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 71..337
score: 38.687

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000002839 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000002839EMLSAT00000002839-698686Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000002839 ID=EMLSAP00000002839|Name=EMLSAP00000002839|organism=Lepeophtheirus salmonis|type=polypeptide|length=377bp
MADGSSIIAGLYMDETYHKMYSSSSRLTDGVPEELREVIHHHWDQFSPVN
PLVTHFFAVFYFFLCSASMFGNLLVMYIFIKVKSLRTPSNMFVVNLALSD
FCMILTQAVPVIFNAFMQRYWAWGVFGCKLYGFLGAVFGVESILTMVIIG
YDRYNVIVKGMNGTRITPMRAFILLLFIWFYAIGVSALALFNVWGGFMAE
GLLLTCSYDYLSEDWNNFTYIIFTIIFLYVIPLSMVFFFYSSIVKAVWSH
ELALKKQAKKMNVDSLRSNTDSNAESAEIRIAKVAITNVSLWAGIWXPYX
LVVLXAVLGSKSSITPLVSQLPSFIAKTASCINPLVYAVSHPKYREALMT
EVPCLGIQEQGAPKKGGEDQSEKQTTA
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