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Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
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Gallery Image |
Title |
Gene or target symbol |
Sex/Stage |
Phenotype |
Date |
|
|
2839 |
Opsin |
unknown |
No visible phenotype
-Missing- |
31.01.2018 - 10:03
07.02.2018 - 10:14 |
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2839/5061/10390 |
Opsins |
unknown |
No visible phenotype
-Missing- |
31.01.2018 - 10:03
07.02.2018 - 10:14 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s163 | supercontig | LSalAtl2s163:319470..321170 + |
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| ensembl | 2013-09-26 .965016 |
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Biotype | protein_coding |
| Evidence | IEA |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of EMLSAP00000002839 >EMLSAP00000002839 ID=EMLSAP00000002839|Name=EMLSAP00000002839|organism=Lepeophtheirus salmonis|type=polypeptide|length=377bp
MADGSSIIAGLYMDETYHKMYSSSSRLTDGVPEELREVIHHHWDQFSPVN
PLVTHFFAVFYFFLCSASMFGNLLVMYIFIKVKSLRTPSNMFVVNLALSD
FCMILTQAVPVIFNAFMQRYWAWGVFGCKLYGFLGAVFGVESILTMVIIG
YDRYNVIVKGMNGTRITPMRAFILLLFIWFYAIGVSALALFNVWGGFMAE
GLLLTCSYDYLSEDWNNFTYIIFTIIFLYVIPLSMVFFFYSSIVKAVWSH
ELALKKQAKKMNVDSLRSNTDSNAESAEIRIAKVAITNVSLWAGIWXPYX
LVVLXAVLGSKSSITPLVSQLPSFIAKTASCINPLVYAVSHPKYREALMT
EVPCLGIQEQGAPKKGGEDQSEKQTTA back to topmRNA from alignment at LSalAtl2s163:319470..321170+ Legend: exonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAT00000002839-698686 ID=EMLSAT00000002839-698686|Name=EMLSAT00000002839|organism=Lepeophtheirus salmonis|type=mRNA|length=1701bp|location=Sequence derived from alignment at LSalAtl2s163:319470..321170+ (Lepeophtheirus salmonis)
TTCCATAGCACTTTGCTTGGATCAAGCTGAAGGAAAACATCCACAAATAC
TCACGGGAAAATATCCTTTTTAAATTCCCTTACTTTTAAATTCAATCAAA
CAATCAAAATGGCAGATGGATCAAGTATCATTGCTGGGCTGTACATGGAT
GAAACCTACCACAAGATGTACTCATCATCCAGTAGATTGACAGATGGGGT
TCCTGAAGAGTTGAGAGAAGTTATACATCATCATTGGGATCAGTTTTCCC
CAGTTAATCCTTTAGTTACACACTTTTTTGCTGTATTTTACTTTTTCCTT
TGTTCTGCGAGTATGTTTGGCAATCTTCTTGTTATGTACATCTTCATCAA
AGTTAAGAGCTTGAGGACACCTGTAAGTTGTTTTTTGAGTAACGGCTAAG
TACCTACAAATTACAATACATATATGCACATTATAAATACTTTTATTTCA
TTTCAGTCTAACATGTTTGTGGTCAACTTGGCACTCTCCGATTTTTGCAT
GATTTTGACTCAAGCTGTACCAGTAATCTTTAATGCATTTATGCAACGCT
ATTGGGCATGGGGAGTTTTTGGATGCAAATTGTATGGGTTTTTGGGTGCT
GTATTTGGAGTGGAGTCTATTTTAACCATGGTTATCATTGGGTACGATCG
TTATAATGTCATTGTGAAGGGTATGAATGGAACAAGAATTACACCCATGA
GAGCATTTATTCTTCTTTTATTTATTTGGTTCTACGCAATTGGTGTCTCT
GCATTAGCTCTATTTAACGTTTGGGGAGGATTCATGGCTGAGGGRCTACT
TCTCACATGCTCTTATGATTATCTTTCAGAAGATTGGAACAACTTTACTT
ATATTATATTCACAATTATCTTTTTGTATGTCATTCCTTTGAGTATGGTA
TTCTTCTTCTACTCATCCATTGTAAAGGCTGTATGGTCACATGAGTTGGC
ACTCAAGAAACAGGCAAAGAAAATGAATGTTGATTCTCTACGTAGTAACA
CTGTAAGTGATTCATTATTAATACCAAATGCCATTACTAAACAGTACGGA
TTCACTTATTTCTCAACAGGACTCTAACGCAGAATCAGCTGAAATTAGAA
TTGCAAAAGTAGCCATTACAAATGTGTCCCTCTGGGCTGGAATTTGGMCT
CCATATMCTCTTGTTGTCCTTSCTGCCGTTCTTGGAAGCAAAAGTTCCAT
CACTCCTCTTGTATCTCAGTTGCCTTCTTTCATTGCTAAAACAGCCTCCT
GTATAAATCCACTTGTGTATGCTGTCAGTCATCCAAAATACAGAGAAGCC
CTTATGACAGAAGTGCCTTGTCTAGGTATTCAAGAACAAGGTGCTCCTAA
GAAGGGTGGAGAAGACCAATCAGAGAAACAGACAACTGCTTAGAGTTGTT
TTACTTTCAGATAGACCATCTTCATATATTTCTATACTTAAAAAAAAACA
AAAAAACTATTTTTTTTTGTCCTTACCATTTCGATTTTTGATTTTAAAGT
ATATGTTTCTTCCTTTAGGTACTTATAGTGTATCGTGCCATAAGCCTGCA
AATTCTCAAAGGCTTTGAAAGAGTCTTGTAGCCTTTTTACATTATATGTA
TAAAAATATATTACAATTATTCATATATTTATAATAAAATAATTACAATA
ATAAATTATATTTTATTTCTGACTCTTTGATTTAATTGAGTCTTATTTCC
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