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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR003593 | AAA+ ATPase domain | SMART | SM00382 | AAA | coord: 389..575 e-value: 1.2E-15 score: 68.0 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 363..588 e-value: 1.5E-74 score: 249.7 |
None | No IPR available | GENE3D | 2.170.270.10 | | coord: 671..733 e-value: 1.1E-4 score: 21.1 |
None | No IPR available | GENE3D | 1.20.1560.10 | | coord: 135..341 e-value: 3.0E-33 score: 114.7 |
None | No IPR available | PANTHER | PTHR24221 | FAMILY NOT NAMED | coord: 58..588 |
None | No IPR available | PANTHER | PTHR24221:SF18 | SUBFAMILY NOT NAMED | coord: 58..588 |
None | No IPR available | SIGNALP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | coord: 1..16 score: 0.51 |
None | No IPR available | SUPERFAMILY | 82199 | SET domain | coord: 643..737 |
None | No IPR available | TMHMM | TMhelix | | coord: 79..101 |
None | No IPR available | TMHMM | TMhelix | | coord: 290..312 |
None | No IPR available | TMHMM | TMhelix | | coord: 150..172 |
None | No IPR available | TMHMM | TMhelix | | coord: 121..143 |
None | No IPR available | TMHMM | TMhelix | | coord: 182..204 |
IPR003439 | ABC transporter-like | PFAM | PF00005 | ABC_tran | coord: 381..529 e-value: 1.7E-31 score: 109.2 |
IPR003439 | ABC transporter-like | PROSITE | PS50893 | ABC_TRANSPORTER_2 | coord: 364..598 score: 22.642 |
IPR018796 | Uncharacterised protein family UPF0671 | PFAM | PF10231 | DUF2315 | coord: 896..999 e-value: 8.6E-22 score: 77.2 |
IPR001140 | ABC transporter, transmembrane domain | PFAM | PF00664 | ABC_membrane | coord: 135..314 e-value: 3.1E-17 score: 62.7 |
IPR017871 | ABC transporter, conserved site | PROSITE | PS00211 | ABC_TRANSPORTER_1 | coord: 501..515 |
IPR011527 | ABC transporter type 1, transmembrane domain | PROSITE | PS50929 | ABC_TM1F | coord: 78..326 score: 24.671 |
IPR011527 | ABC transporter type 1, transmembrane domain | SUPERFAMILY | 90123 | ABC transporter transmembrane region | coord: 74..341 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 360..588 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000003104 ID=EMLSAP00000003104|Name=EMLSAP00000003104|organism=Lepeophtheirus salmonis|type=polypeptide|length=1006bp MLFRLCGSSMARMSSRVLLKPKKGPLALWSKNCFTPGVSGLARTGIKVVP KDKVGPKEIFSTMFHHIWPKNEPQVRKRVMFALGLLVTAKLLNVSVPYFF KKAVDVLNSEANDYFSLGTPAETVFAMASAILIGQTGALSKVIDRGSRGI SFALNAMVFNIFPTIFELGLVSGVLGYNFGANYAFTALGAVGMYSVFTLG ITSWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEAYECQQYDKSL LKYETASLKTTESLSLLNFGQNAIFSVALSAIMMMAAKDISNGALTVGDL IMVNGLLFQLSLPLNFLGSVYREIRQSLIDMQVMFQLMATPSKITSSKGA TEINFINNMEDASITFDDVKFGYNIDKNIANGLSFSVESGKTIAIVGESG SGKSTLVRLLYRFYEPQLGSIKIGNYNINEVTLDSLRRQISIVPQDCVLF NDTIFHNIKYGNLNCSDEDVYKVAKLAEIDNAIRSWPQGYLTQVGERGLK LSGGEKQRVAIARAALKDSPIIIFDEATSSLDSITETMIMKALKRVTSGK TAIIIAHRLSTVVHADEIFVLSNGKVIERGTHEELLNTLTLPNGRSRRFV DLISHKDNILMDSARKDAFFTYLTIIRNKIGGAMEIKESEVLDIFTKILI NSGFMLNDTLLNIGTSLSLEFSAIDHSCRPNAIYMFTGRQIVVKALCDIA NFDDVRIAYIGNIEPRSIRQKMLSHQYFFDCDCEECTDDPLNLEKIKSHS PCCPQCKNLLDDDKCINCNKEVNLSRYFKIKEILKNEKEMNAKTCLYFVE VLKYFHPFDYVSYKFCDDLIARNDLIDNNKLQILYERNILTMRKYGCIYD IQMSEYLMNLIGILLSKQELKSVPNLLFEAKAIMEGIDESKSSCSKGSLE SRLQSLKEDTSKFHESYWTTHNDAFIKERTQFIARLLTEKYPDQIEDKKT LSSKEMSLFYKSFLDKRKKLHWDYNLDWQKRNARILLLSMGVELKNIFNH FTPKAK back to top
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