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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 202..210 score: 45.06 coord: 194..202 score: 51.69 coord: 137..153 score: 27.19 coord: 154..169 score: 41.24 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 134..213 e-value: 5.2E-18 score: 75.8 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 136..211 e-value: 9.7E-17 score: 60.8 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 137..164 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 134..217 score: 16.162 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 402..505 e-value: 7.3E-8 score: 31.4 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 202..229 e-value: 3.3E-5 score: 22.9 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 406..504 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 137..201 e-value: 4.5E-15 score: 55.6 |
None | No IPR available | PANTHER | PTHR24082 | NUCLEAR HORMONE RECEPTOR | coord: 52..504 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 136..224 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000004174 ID=EMLSAP00000004174|Name=EMLSAP00000004174|organism=Lepeophtheirus salmonis|type=polypeptide|length=510bp MDLFSFSCFPPSSESSPMSIGLDIGELDSYLNNTFTSTPLELHHQNNLQH HQPQHIFPPPFDFPEYQIRNYHYQLSSTEGPINGIDYGYNLVNNNEIEDF TILNAVPLPESPIPSLIEVKEEPKKRKRRPEPMTDVCRICGDIAPPHNHY GAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFC RYRGCLSAGMXPSYVTTAEERLQKKKNSKRGKKLVIKLDIKEEIDYGDFP TFRVIADINIPLTSSGSYPTMCFMIEQNRRVEHRIQCRNFTWHSIAVGVS LMMELIRVGSKCLAPSNDIEIEVQFNENNKSIISGVTNIPNTDPVLRVNV SSVFSARVGLKEQLLETIGSKDYIVQKTPYPNMAQDTILSMKQVFTNPWG DGGLSRDCVNKFDNILEKMEKLNLDRKIECLLSVIPFFAGTDNPYETELL SKVQEEINMVLFQHVYESAGPRDGKTLFSKIMSIIVDLQEIVTLCRKKAL DFKIASCGIS back to top
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