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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 1473..1494 |
None | No IPR available | COILS | Coil | Coil | coord: 659..662 |
None | No IPR available | COILS | Coil | Coil | coord: 1439..1467 |
None | No IPR available | COILS | Coil | Coil | coord: 690..698 |
None | No IPR available | GENE3D | 2.170.260.10 | | coord: 992..1083 e-value: 1.2E-4 score: 21.7 coord: 1118..1130 e-value: 1.2E-4 score: 21.7 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 259..311 e-value: 1.2E-8 score: 33.9 |
None | No IPR available | PANTHER | PTHR14950 | HELICASE-RELATED | coord: 12..2087 |
None | No IPR available | PANTHER | PTHR14950:SF3 | DICER-1 | coord: 12..2087 |
None | No IPR available | SUPERFAMILY | 54768 | dsRNA-binding domain-like | coord: 2020..2087 |
IPR000999 | Ribonuclease III domain | SMART | SM00535 | RIBOc | coord: 1851..2017 e-value: 8.0E-40 score: 148.3 coord: 1599..1808 e-value: 1.1E-19 score: 81.4 |
IPR000999 | Ribonuclease III domain | PFAM | PF00636 | Ribonuclease_3 | coord: 1617..1787 e-value: 1.6E-31 score: 109.0 coord: 1872..1994 e-value: 2.6E-21 score: 76.0 |
IPR000999 | Ribonuclease III domain | GENE3D | 1.10.1520.10 | | coord: 1837..1929 e-value: 1.1E-42 score: 144.5 coord: 1966..2017 e-value: 1.1E-42 score: 144.5 |
IPR000999 | Ribonuclease III domain | GENE3D | 1.10.1520.10 | | coord: 1755..1804 e-value: 2.1E-34 score: 117.7 coord: 1589..1674 e-value: 2.1E-34 score: 117.7 |
IPR000999 | Ribonuclease III domain | PROSITE | PS50142 | RNASE_3_2 | coord: 1578..1787 score: 21.805 |
IPR000999 | Ribonuclease III domain | PROSITE | PS50142 | RNASE_3_2 | coord: 1836..1994 score: 34.982 |
IPR000999 | Ribonuclease III domain | SUPERFAMILY | 69065 | RNase III domain-like | coord: 1761..1804 coord: 1586..1674 |
IPR000999 | Ribonuclease III domain | SUPERFAMILY | 69065 | RNase III domain-like | coord: 1968..2015 coord: 1836..1929 |
IPR003100 | Argonaute/Dicer protein, PAZ domain | SMART | SM00949 | PAZ | coord: 980..1154 e-value: 6.0E-40 score: 148.7 |
IPR003100 | Argonaute/Dicer protein, PAZ domain | PFAM | PF02170 | PAZ | coord: 997..1151 e-value: 1.2E-36 score: 124.8 |
IPR003100 | Argonaute/Dicer protein, PAZ domain | PROSITE | PS50821 | PAZ | coord: 983..1130 score: 28.096 |
IPR003100 | Argonaute/Dicer protein, PAZ domain | SUPERFAMILY | 101690 | PAZ domain | coord: 1118..1130 coord: 1015..1083 |
IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 259..311 e-value: 1.6E-6 score: 27.7 |
IPR005034 | Dicer dimerisation domain | PFAM | PF03368 | Dicer_dimer | coord: 392..479 e-value: 1.2E-24 score: 85.7 |
IPR005034 | Dicer dimerisation domain | PROSITE | PS51327 | DICER_DSRBF | coord: 391..483 score: 25.812 |
IPR014720 | Double-stranded RNA-binding domain | PROSITE | PS50137 | DS_RBD | coord: 2019..2085 score: 8.518 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 259..313 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000004598 ID=EMLSAP00000004598|Name=EMLSAP00000004598|organism=Lepeophtheirus salmonis|type=polypeptide|length=2092bp MYPKIKARINSRIITLTAFLFNGDKTLGSLDKRLSKLENTFGNRIETSCE VLTTLRYVSKPRFGVLTFIQSKEPNEVESQIENSIQGFINFLKNHRFSLE ETYGEDFEDIIQEIPDPSKLPLKLIDDFLNILRTCGVWCAERAALLLTIK IDKLKTREKYERHYLLLSVLYTEMLKICKICDDAFADLTDREKMTKYSKP KLLRLMSVLLQYKPEHITDHSEDPKEKESKDESSTKEEEKKVNAPPPEEE AEETDEGLLNHRKQEEGLRRFRMRECNILISNSLLEVGIDGVRCNLVLAF DAPDSFHTYAHYKVKAKSSVSWFLSLCQEDKLESYLNSLKEYHSIEKSLV DRCQYKDPSVEERYLSDANDHIITPFIPKNLYYPTCYLKNSILLLNRYCA KLPSDTFTRLTPLAGILKTEGGGYICGIQLPINCPLKKIIIGLVMPNETL AKRAAAYAAILELHKIGELDPFMNPVGKDGTGHAAYLNNRFLKHRNYHGN RTYKKGSSSNSDNNSKEALTEKVLNNNNSKEESSGETFIKIESESKDGHL HGEEIDTQTPSNIEESSSETFIKGEIESKDDLSLGDGVDAQSPSNMEELP IIIMEDMIVQSQEIKEEEQFEKVENESESKDVHSHRDEIDAESDSNIDEL SILMENVSIQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSNAMEEEKVE KVSQSNEDGIKAPKEEVCKISESKDALLSTESKDLEGVLGEEXIEVSSEA CVAANDKFESKDIMENASDEKKDVDAEQNNNPVTESNTTVNDKSESKDVA DNAQSVDNTKTLPSGPHFDPPRPGTTKRRQYYYKKVAGCLKPKNNDPSPI SFRLYHLNMELSCPIPDDQNTRGRKIYPPENSVQGFGFLVRGGNSIPPIC PFPIYTRSGEVLVEIKEKKDSILLTEEEYELIICFHRYTFSKVLRLEKYP MQFTPDKSRNSILILPMVKSTEQESELGFIIDWDFLRRIKEENEKKMSVV SDEDRTDYTFDKEDYLDAVIMPWYRNQDQPQYFYVAEICEHLNPTSDFPG QGFETFSKYYQTKYNITIQNLEQPLLDVDHTSHRLNFLTPRYVNRKGVAL PTSSEETKRNKRENLEQKQILVPELCQIHPFPXSLWRQTVSLPCILYRIN GLLIADDLRSLIAREMSFGKPELDSDFVWPPLNFGWTLADVLKNRDNALA LNTQDNPKKNRRIVNSTTHVIITEALSPVSDTPAIEEIFDDEEDEGGSSK GDGDDLTRLSDRIMNKMNEEDNKRKQRQLEIGTWSNDLIENVGKQSKSIR SSSIGGKFLRFQDEFDEEDLELLDPNMALPDNLTLLSNELLPKTLETEGG SKDWGTGIEQKIFRVGSPTFFSNPNINIPGMMDDLDGLSCSDSDDDEDFY ENFDSYRRKALDFNNPNSSVTQDGSVRIEFRGENMAEAIEDEHEENLRVE SLARNLEEEAKMLSEVPWPEEQNEEAEDEEKDIEDQKSENEMDSIELEVI VLKEKDTFNRYGFPEKQSCVEYQKLEYDPEKNAVMDEKEVVETFMKDFNI NNMDIMVPIDYPKDECEFTGVLPRDSDEEMSFSFDHQPELVSHPGPSPSI ILQGLTMSNSNDAINLERLETIGDSFLKYAIXSYLFNVYDTVHEGRLSHL RSKQVSNLNLFKLGRKKKLGECMIATKFEPHDNWLPPSYHVQPELEQALI ESGVPANLWNMAELPSTDFGRMTTKEIVELIQEKSRTAQQPGKSSTESVQ DMPSFVPYNLLTQHSIPDKSIADCVEALIGAYLISCGQRGALLFMTWLGL KVIPPEKNEGRSISSSQKVEHLPHIERQLNFFLSGYEEFEELIGYKFKDK TYLLQSFSHASFYPNRITDCYQRLXFLGDAILDYLITRHLYEDPRQHSPG ALTDLRSALVNNTIFAFLAVKFQFHKYFKHFSPGLQTVIDRFVKLQVQNE FKVFDEFYLIEEDDDSEEAEDIEVPKALGDIFESVAGAIFLDSGLSLDAV WCIYFRMMQTEIEQFSSNVPKSPIRELLELEPETAKFGKPEKLADGKRVR VSVEVFGKGTFKGIGRNYRIAKCTAAKCALRALKKSSHSHHK back to top
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