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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 176..197 |
| None | No IPR available | PFAM | PF14259 | RRM_6 | coord: 511..560
e-value: 1.7E-4
score: 21.3
coord: 231..294
e-value: 0.0011
score: 18.7 |
| None | No IPR available | PANTHER | PTHR24012:SF87 | SUBFAMILY NOT NAMED | coord: 3..811 |
| None | No IPR available | PANTHER | PTHR24012 | FAMILY NOT NAMED | coord: 3..811 |
| None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 3..83 |
| None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 616..802 |
| None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 221..306 |
| None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 506..579
coord: 323..412 |
| IPR000504 | RNA recognition motif domain | SMART | SM00360 | RRM | coord: 724..797
e-value: 5.6E-20
score: 82.4
coord: 4..79
e-value: 8.7E-17
score: 71.8
coord: 228..296
e-value: 0.027
score: 20.6
coord: 621..697
e-value: 6.4E-17
score: 72.2
coord: 325..398
e-value: 2.2E-20
score: 83.7
coord: 510..577
e-value: 0.0024
score: 27.1 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 5..76
e-value: 2.2E-11
score: 43.1
coord: 725..794
e-value: 9.2E-18
score: 63.5
coord: 326..395
e-value: 3.0E-17
score: 61.8
coord: 622..694
e-value: 1.7E-14
score: 53.0 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 509..581
score: 10.07 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 620..701
score: 14.88 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 227..295
score: 9.03 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 324..402
score: 17.455 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 723..801
score: 17.131 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 3..83
score: 13.652 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 590..701
e-value: 6.9E-24
score: 83.6
coord: 702..803
e-value: 5.9E-26
score: 90.3 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 499..569
e-value: 1.7E-8
score: 33.9 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 311..408
e-value: 2.6E-24
score: 85.1 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 214..305
e-value: 1.6E-10
score: 40.1 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 3..81
e-value: 3.4E-17
score: 61.8 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000004804 ID=EMLSAP00000004804|Name=EMLSAP00000004804|organism=Lepeophtheirus salmonis|type=polypeptide|length=845bp
MATRLIVKNLPPSITESKLRDKFSSSAEGCEITDIKLKYTPDGVFRRFGF
VGFQCAESALKALQYLNGTYFGTQKCTVEICEDLGKAPKRNIKKKKQDAT
EVNKDPPKQETKLHPRLEKKNEDIKKIIEKYKLDVKFQEFLRLHKSNSSK
WSHEEIMKLEKKYESKSGDDSDDDDKDSEDEEEKDEEEDIKIAEDSGISD
LDYLKSLIKTEQTDTKAPKEHKNESYFTVKLMDLPYKAKKKHIKKFFQAV
NLKTKSIRVPRNVKGIAYAGFSTEKEMKKALSRNKSIMEGNSVKVLKYVD
KSQDKVKKIYPEVENEEGVISDSGRLFLRNLSYSLTEGDLETLFKKFGPL
TEVNLPIDKISRKSKGFAFVTFMFPENALSAFTELDGTSYQGRLLHIIPG
KPKDDEDEEKNQNLSFKEKKKLKEKKSATSSHNWNTLFLGTSAVADLVSD
KYNVSKKDVLLGEGNQTAAVRLALGETQIVADTKSFLEEXGVSLEAFDGN
PKKLTRSKTVILVKNLPIGVPVEEIRDKFAKYGSLGRVILPPNCATALVE
FYEASEARGAFRGLAYSKFRDTIFLLEFAPEGVLNPDDRPPPSKMEESSQ
DSAAMDEEKVDENEEPEPETTLFVKNLNFSTNESSLKRHFEKMGAIHEVT
IAKKKDNVEGLLSMGFGFVRFKKKAIADKALKLFQHKMLDNHSLELKKSE
RVSEAQDPRHARKSTNKDIKESSKILVRNIPFEAHKKEIEDLFKTFGQIK
FVRLPKKVTGSHRGFAFVEYHTVEEAKKAFNALSHSTHLYGRRLVLEWAE
QEESLESLRKKASREADIYENPXAKRLKKSDLLDFMDKPSIEPAE back to top
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