|
|
Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001632 | G-protein, beta subunit | PRINTS | PR00319 | GPROTEINB | coord: 51..67
score: 59.54
coord: 89..104
score: 82.58
coord: 70..84
score: 83.23
coord: 107..124
score: 81.82 |
| IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 70..84
score: 41.24
coord: 157..171
score: 38.14
coord: 199..213
score: 37.77 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 301..340
e-value: 0.013
score: 24.7
coord: 173..212
e-value: 4.1E-9
score: 46.3
coord: 132..170
e-value: 4.7E-7
score: 39.4
coord: 44..83
e-value: 3.0E-5
score: 33.4
coord: 257..298
e-value: 4.6E-4
score: 29.5
coord: 86..125
e-value: 0.006
score: 25.8
coord: 215..254
e-value: 1.0E-8
score: 45.0 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 307..340
e-value: 0.0012
score: 18.5
coord: 272..298
e-value: 0.0011
score: 18.6
coord: 137..170
e-value: 5.2E-7
score: 29.1
coord: 217..254
e-value: 9.4E-10
score: 37.8
coord: 96..125
e-value: 3.5E-4
score: 20.2
coord: 174..212
e-value: 1.2E-9
score: 37.5
coord: 49..83
e-value: 4.7E-5
score: 22.9 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 273..298
score: 10.107 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 139..179
score: 11.277 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 308..340
score: 12.915 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 51..92
score: 13.148 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 222..263
score: 13.249 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 180..221
score: 15.688 |
| IPR016346 | Guanine nucleotide-binding protein, beta subunit | PIRSF | PIRSF002394 | GNBP_B | coord: 1..340
e-value: 9.5E-226
score: 759.2 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 45..340
e-value: 6.1E-77
score: 258.0 |
| None | No IPR available | PANTHER | PTHR19850 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA (G PROTEIN BETA) | coord: 1..340 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 157..171 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 70..84 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 285..299 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 51..340
score: 58.266 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 7..340 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000005405 ID=EMLSAP00000005405|Name=EMLSAP00000005405|organism=Lepeophtheirus salmonis|type=polypeptide|length=340bp
MNELDPLRAEAEQLKNAIRDGRKAACDTTLAQAAGTMDPIGRIQMRTRRX
LRGHLSKIYAMHWGAESRNLVSASQDGKLIVWDSYSTNKVHAIPLRSSWV
MTCAYAPSGNFVACGGLDNICSIYNLKSREGSVRVSRELPGHTGYLSCCR
FLDDNLIVTSSGDMTCALWDIETGQQTTTYTGHTGDVMSLSLSPDSRTFV
SGACDASAKLWDIRDGMCKQTFPGHESDINAVTFFPQGTAFCTGSDDATV
KLYDIXADQELAQYSHDNIICGVTSVAFSKSGRLLMAGYDDFNVNVWDTL
RVERAGVLAGHDNRVSCLGVTDXGMAVXTGSWDSFLKIWN back to top
|
