|
|
Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 436..450
score: 32.15
coord: 270..284
score: 37.11
coord: 396..410
score: 38.1 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 370..409
e-value: 3.9E-9
score: 46.3
coord: 193..232
e-value: 1.0E-4
score: 31.7
coord: 286..325
e-value: 2.1E-8
score: 43.9
coord: 235..283
e-value: 1.3E-7
score: 41.2
coord: 452..491
e-value: 5.8E-9
score: 45.8
coord: 412..449
e-value: 9.7E-5
score: 31.8
coord: 328..367
e-value: 1.7E-5
score: 34.3 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 335..367
e-value: 4.0E-5
score: 23.1
coord: 371..409
e-value: 2.4E-9
score: 36.5
coord: 416..448
e-value: 3.2E-6
score: 26.6
coord: 453..491
e-value: 3.2E-9
score: 36.2
coord: 200..232
e-value: 2.8E-6
score: 26.8
coord: 237..283
e-value: 4.8E-9
score: 35.6
coord: 288..325
e-value: 7.9E-8
score: 31.7 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 419..458
score: 11.277 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 335..376
score: 14.051 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 377..418
score: 13.55 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 459..498
score: 11.778 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 293..334
score: 13.282 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 242..292
score: 10.909 |
| IPR003648 | Splicing factor motif | SMART | SM00500 | SFM | coord: 76..128
e-value: 4.9E-13
score: 59.3 |
| IPR014906 | Pre-mRNA processing factor 4 (PRP4)-like | PFAM | PF08799 | PRP4 | coord: 81..109
e-value: 8.0E-13
score: 47.3 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 184..491
e-value: 5.9E-88
score: 294.5 |
| IPR027106 | U4/U6 small nuclear ribonucleoprotein Prp4 | PANTHER | PTHR19846 | WD40 REPEAT PROTEIN | coord: 53..498 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 270..284 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 396..410 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 312..326 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 200..498
score: 62.247 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 194..490 |
| None | No IPR available | SUPERFAMILY | 158230 | PRP4-like | coord: 58..113 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000006156 ID=EMLSAP00000006156|Name=EMLSAP00000006156|organism=Lepeophtheirus salmonis|type=polypeptide|length=498bp
MSDDEDVQYVKRSRHVHFGSLAENVGSSVDGAAHVSQSSEYLPLSAHENG
GEDDGKREILEEFERRKRARAIPVPTDDDEIKRDLRTLGEPICLFGEGPA
DRRNRLRDFLSEFGEDAVKKRRDEAITVKEHEETTWYHEGPSSLRVARKW
IAKYSLPRAKERIARLKAEESARLKEEALEMARXQEIQKRLKSLDVVASQ
IADTRPISWCTFSPNSQYLLTGSWSGLCKLWSVPDCKEIRTLRGHSSNIG
SIVFNPHATLEGHSNKDPCMASCSQDGSVKLWNLESDEPIADIEGHDSRV
SRCAYHPSGRFLATCVYDNSWRLWDLEQLQEVLHQEGHSKPVHCIAFQND
GSLALTGGLDSFGRIWDLRTGQCIMFLEGHLKGIIGVDWSRDGYHCATGS
SDNACKIWDLRKRKIEYTIPAHTNVVSNVVFDEDYLLTASYDGTAKLWAR
KTWQPLASLKGHDLRLMDCAISPDRSYIATCSYDRTFKLWSXDIKQRL back to top
|
