EMLSAP00000006195, EMLSAP00000006195 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000006195
Unique NameEMLSAP00000006195
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length512
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006028Gamma-aminobutyric acid A receptorPRINTSPR00253GABAARECEPTRcoord: 316..337
score: 48.95
coord: 350..371
score: 55.87
coord: 481..501
score: 50.27
coord: 290..310
score: 48.38
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 205..219
score: 48.11
coord: 96..112
score: 36.39
coord: 281..293
score: 23.56
IPR006201Neurotransmitter-gated ion-channelTIGRFAMTIGR00860TIGR00860coord: 39..501
e-value: 3.0E-121
score: 403.1
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 37..504
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 294..388
e-value: 8.2E-32
score: 110.8
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 289..504
IPR006202Neurotransmitter-gated ion-channel ligand-bindingPFAMPF02931Neur_chan_LBDcoord: 147..285
e-value: 3.5E-26
score: 91.5
coord: 45..116
e-value: 8.1E-12
score: 44.6
IPR006202Neurotransmitter-gated ion-channel ligand-bindingGENE3D2.70.170.10coord: 61..286
e-value: 3.5E-48
score: 163.1
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 153..286
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 44..119
NoneNo IPR availableGENE3D1.20.58.390coord: 288..379
e-value: 1.2E-48
score: 163.6
coord: 474..503
e-value: 1.2E-48
score: 163.6
NoneNo IPR availablePANTHERPTHR18945:SF320SUBFAMILY NOT NAMEDcoord: 37..504
NoneNo IPR availableTMHMMTMhelixcoord: 352..374
NoneNo IPR availableTMHMMTMhelixcoord: 480..502
NoneNo IPR availableTMHMMTMhelixcoord: 315..337
NoneNo IPR availableTMHMMTMhelixcoord: 288..310
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 205..219

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000006195 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000006195EMLSAT00000006195-702042Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000006195 ID=EMLSAP00000006195|Name=EMLSAP00000006195|organism=Lepeophtheirus salmonis|type=polypeptide|length=512bp
MATLEVLQSGLNSLYNMGQGAMRPLDGFTHSRFLPGKEVNYRQEEKKILD
SVLGPDVYDKRIRPSGLNSTDSASLVTVNIFVRSFSNIDDVKMEYSFQIT
LRQQWNDGRLRFKDKLLSMEGIVIDFDFNIIPFYPDAASSGGLFQKDKIR
YLTMTDSSKVWMXDTFFXNEKIGRFHNILQDNLYVRVFPNGDVLYSIRVS
LTCACSMHLALFPLDKQTCNLDVASYGWTMNDLIYQWKETNPVQMVANLS
LPGGFKLDGFTNHNCDVKXATGSYSCLRVEITFARQLSFYVLTIYIPCFM
IVLVSWMSFWIDHKAVPARVSLGITXLLAMSTTQASINSSLPPVAYTKAI
DVWCGVCVTFVFSALLEYALVNYASRSDAQRAAKQKEAKERELEQCAFST
ERIEDGGFPLSMVNRLPYDRTENMSHSHFLFKDPLMRRIEGAPMIPPGGL
LQNEIPLQVRRNPISDWCQRFQFRAKKIDVISRFLFPSTFAFFNILYWSY
YLTQEQQTSKKK
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