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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR006028 | Gamma-aminobutyric acid A receptor | PRINTS | PR00253 | GABAARECEPTR | coord: 316..337 score: 48.95 coord: 350..371 score: 55.87 coord: 481..501 score: 50.27 coord: 290..310 score: 48.38 |
IPR006201 | Neurotransmitter-gated ion-channel | PRINTS | PR00252 | NRIONCHANNEL | coord: 205..219 score: 48.11 coord: 96..112 score: 36.39 coord: 281..293 score: 23.56 |
IPR006201 | Neurotransmitter-gated ion-channel | TIGRFAM | TIGR00860 | TIGR00860 | coord: 39..501 e-value: 3.0E-121 score: 403.1 |
IPR006201 | Neurotransmitter-gated ion-channel | PANTHER | PTHR18945 | NEUROTRANSMITTER GATED ION CHANNEL | coord: 37..504 |
IPR006029 | Neurotransmitter-gated ion-channel transmembrane domain | PFAM | PF02932 | Neur_chan_memb | coord: 294..388 e-value: 8.2E-32 score: 110.8 |
IPR006029 | Neurotransmitter-gated ion-channel transmembrane domain | SUPERFAMILY | 90112 | Neurotransmitter-gated ion-channel transmembrane pore | coord: 289..504 |
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding | PFAM | PF02931 | Neur_chan_LBD | coord: 147..285 e-value: 3.5E-26 score: 91.5 coord: 45..116 e-value: 8.1E-12 score: 44.6 |
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding | GENE3D | 2.70.170.10 | | coord: 61..286 e-value: 3.5E-48 score: 163.1 |
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding | SUPERFAMILY | 63712 | Nicotinic receptor ligand binding domain-like | coord: 153..286 |
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding | SUPERFAMILY | 63712 | Nicotinic receptor ligand binding domain-like | coord: 44..119 |
None | No IPR available | GENE3D | 1.20.58.390 | | coord: 288..379 e-value: 1.2E-48 score: 163.6 coord: 474..503 e-value: 1.2E-48 score: 163.6 |
None | No IPR available | PANTHER | PTHR18945:SF320 | SUBFAMILY NOT NAMED | coord: 37..504 |
None | No IPR available | TMHMM | TMhelix | | coord: 352..374 |
None | No IPR available | TMHMM | TMhelix | | coord: 480..502 |
None | No IPR available | TMHMM | TMhelix | | coord: 315..337 |
None | No IPR available | TMHMM | TMhelix | | coord: 288..310 |
IPR018000 | Neurotransmitter-gated ion-channel, conserved site | PROSITE | PS00236 | NEUROTR_ION_CHANNEL | coord: 205..219 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000006195 ID=EMLSAP00000006195|Name=EMLSAP00000006195|organism=Lepeophtheirus salmonis|type=polypeptide|length=512bp MATLEVLQSGLNSLYNMGQGAMRPLDGFTHSRFLPGKEVNYRQEEKKILD SVLGPDVYDKRIRPSGLNSTDSASLVTVNIFVRSFSNIDDVKMEYSFQIT LRQQWNDGRLRFKDKLLSMEGIVIDFDFNIIPFYPDAASSGGLFQKDKIR YLTMTDSSKVWMXDTFFXNEKIGRFHNILQDNLYVRVFPNGDVLYSIRVS LTCACSMHLALFPLDKQTCNLDVASYGWTMNDLIYQWKETNPVQMVANLS LPGGFKLDGFTNHNCDVKXATGSYSCLRVEITFARQLSFYVLTIYIPCFM IVLVSWMSFWIDHKAVPARVSLGITXLLAMSTTQASINSSLPPVAYTKAI DVWCGVCVTFVFSALLEYALVNYASRSDAQRAAKQKEAKERELEQCAFST ERIEDGGFPLSMVNRLPYDRTENMSHSHFLFKDPLMRRIEGAPMIPPGGL LQNEIPLQVRRNPISDWCQRFQFRAKKIDVISRFLFPSTFAFFNILYWSY YLTQEQQTSKKK back to top
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