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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 169..177 score: 43.92 coord: 161..169 score: 60.8 coord: 124..139 score: 50.05 coord: 108..124 score: 54.85 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 105..180 e-value: 4.5E-32 score: 122.6 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 107..179 e-value: 1.7E-25 score: 88.9 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 108..134 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 105..184 score: 19.208 |
IPR001723 | Steroid hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 173..183 score: 31.68 coord: 527..542 score: 40.44 coord: 584..601 score: 35.31 coord: 437..458 score: 25.11 coord: 458..474 score: 36.42 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | SMART | SM00430 | HOLI | coord: 436..596 e-value: 4.8E-25 score: 99.2 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 429..607 e-value: 3.6E-23 score: 81.6 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 410..625 e-value: 4.7E-81 score: 271.6 coord: 314..323 e-value: 4.7E-81 score: 271.6 coord: 174..193 e-value: 4.7E-81 score: 271.6 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 178..192 coord: 418..625 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 105..173 e-value: 7.2E-31 score: 105.8 |
None | No IPR available | PANTHER | PTHR24083:SF0 | NUCLEAR RECEPTOR SUBFAMILY 2 GROUP E MEMBER 1 | coord: 96..642 |
None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 96..642 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 105..193 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000007741 ID=EMLSAP00000007741|Name=EMLSAP00000007741|organism=Lepeophtheirus salmonis|type=polypeptide|length=648bp SHFLHNPIHEIVKVAGHFLGRIGGEGSSSASDLSTSSSSSLLGDAGALNL SESSEAVCDSFNRQKALAQKFRLFALHQRNLLTKKTHSKIVVNKTEMGTG DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRQRIYTCKAQGEF KGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHERGPRKSKLQKDLNSA FRNGNPLLSPTSLNSSSPSSTTLNTLSQPSNFGISVTSSSNHQLHPLPPP FHYSHHGHHLPSLLEPPKLSPFLFPAAXAAAAAAXAAAGSNLFLNPPTTL NTTPPPSKLSPSSSSSSSSSPMSHHPLMSPPNVINSNSGVKMSHLTPHPF FPHHQRPALLSLLSGENNKITELWKSPPPPLLSSSSILSIPPASGSAILP PPPPLFPFFPSSVSKEDEESEHPPSSFSPTWPMLQETTARLLFMAVRWVK CLAPFQTLSSKDQLLLLQESWKDLFLMHLSQWAIPWDLSNLLLSRHASLV DRSDVEDHVVDMEIKTVQEIMCRFRQLSPDGTECGXLKAIVLFKPETAGL NDFHPVEMLQDQAQCILGDYVRNRYSRQPTRFGRLLLAIPLLRMIRANTI ENFFFRETVGDTSVIRLIQDMYNADKDIDNNEINSFVVNSLCAKCNIN back to top
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