|
|
Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000301 | Tetraspanin | PRINTS | PR00259 | TMFOUR | coord: 601..624
score: 31.83
coord: 640..666
score: 28.29
coord: 667..695
score: 24.94
coord: 802..828
score: 31.44 |
| IPR003578 | Small GTPase superfamily, Rho type | SMART | SM00174 | RHO | coord: 439..619
e-value: 1.8E-5
score: -47.6 |
| IPR003579 | Small GTPase superfamily, Rab type | SMART | SM00175 | RAB | coord: 437..601
e-value: 2.8E-11
score: 31.1 |
| IPR020849 | Small GTPase superfamily, Ras type | SMART | SM00173 | RAS | coord: 434..604
e-value: 6.1E-23
score: 92.2 |
| IPR020849 | Small GTPase superfamily, Ras type | PROSITE | PS51421 | RAS | coord: 427..650
score: 17.029 |
| IPR001806 | Small GTPase superfamily | PFAM | PF00071 | Ras | coord: 438..570
e-value: 1.0E-31
score: 109.4 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 437..570
e-value: 5.8E-36
score: 122.9 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 276..348
e-value: 1.2E-5
score: 24.1 |
| None | No IPR available | PANTHER | PTHR19282 | TETRASPANIN | coord: 583..830 |
| None | No IPR available | TMHMM | TMhelix | | coord: 642..664 |
| None | No IPR available | TMHMM | TMhelix | | coord: 802..824 |
| None | No IPR available | TMHMM | TMhelix | | coord: 673..695 |
| None | No IPR available | TMHMM | TMhelix | | coord: 605..627 |
| IPR018499 | Tetraspanin/Peripherin | PFAM | PF00335 | Tetraspannin | coord: 598..826
e-value: 3.7E-43
score: 147.2 |
| IPR005225 | Small GTP-binding protein domain | TIGRFAM | TIGR00231 | TIGR00231 | coord: 437..560
e-value: 4.4E-18
score: 63.4 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 437..570 |
| IPR008952 | Tetraspanin, EC2 domain | SUPERFAMILY | 48652 | Tetraspanin | coord: 695..799 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000008247 ID=EMLSAP00000008247|Name=EMLSAP00000008247|organism=Lepeophtheirus salmonis|type=polypeptide|length=835bp
MYDEEDGLENDQTLRKNKSGFKKAFRFKNFSKIKQSSFSFKKEELLDKEN
TSSADEFSTEEPIDYSKPLSRKSSFSKPXKLNNLFKKELIPSTTTFLGGP
KEESDDTETRLPETSSHVAPSIPRIIIEDFDHLGGREPYSRPSNDFGRSG
DRRNFGRGFNPYRWGTNWSETVSTTPESSILSNQANVIEPSETASTFKEE
SLNDTSKYQGLIKGFINSILHFLPSVVDSPPESNTQSFSTGSKIEKKIPF
SFQSMDRRNSTPKEDSNNPTGVAMEEINSQKEQRKSGPVPMVMASIKRKI
DRKVSIEEIEEFYKKHDFIGWTETSAKNDLMVKDSVKFLVDVMLKQHDED
YFKFRSKSNFEEGSEDEAPTLRLDRKKYESXSSLSNFEEGSEDEAPTLRL
DRKKYESPSSLSKKVNHIMRRKKKTPQKSEGNEIHFYKIGIFGGGGVGKS
CLTFRFQNKQFLELYNPTILDSFINKSFMVDGVIRPLEIMDXAGQDEFKN
MRDLYLKTSDGLFFVYDVTNRDSFREISELINCLKLSREVETFDEIPPTI
IIGNKCDLNAKRKISFEEGMGDKSKYTYHSPSDGKPRQDESVCCSQDCLR
FSTHLFNFLLFLTGIALSGVGLWTIIVKDPSLVLLTSGLYDVIAYALIIM
GLFVLVLSIMGCCGISKRSPRLMLIYSICLXIMXLAEXAIGALAYCYRDY
INSELRVNLFDKYQREYGNEDSITKAIDQLQVGMKCCGVDSFEDWKKTEW
WNQTDIRQKNLVPDSCCLTPSAFCGVRDHPSNIRYTGCIDRIGKIASDHM
IIIGAVSLGVCIIQIFGVCLSCLLHRKMKKMEHYV back to top
|
