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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 282..303 |
None | No IPR available | PANTHER | PTHR22847:SF172 | F-BOX/WD REPEAT-CONTAINING PROTEIN 12 F-BOX AND WD-40 DOMAIN-CONTAINING PROTEIN | coord: 18..231 |
None | No IPR available | PANTHER | PTHR22847 | WD40 REPEAT PROTEIN | coord: 18..231 |
IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 19..58 e-value: 7.4E-7 score: 38.8 coord: 61..100 e-value: 1.4E-7 score: 41.2 coord: 146..185 e-value: 1.5E-10 score: 51.1 coord: 103..143 e-value: 0.0033 score: 26.7 coord: 188..227 e-value: 1.1E-6 score: 38.2 |
IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 190..227 e-value: 8.2E-8 score: 31.7 coord: 24..57 e-value: 1.7E-9 score: 37.1 coord: 148..185 e-value: 4.6E-11 score: 42.0 coord: 65..100 e-value: 2.2E-8 score: 33.5 coord: 120..143 e-value: 9.1E-4 score: 18.9 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 195..227 score: 14.886 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 26..67 score: 15.555 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 153..194 score: 11.979 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 68..109 score: 11.912 |
IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 25..229 e-value: 3.7E-63 score: 212.8 |
IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 26..236 score: 45.744 |
IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 25..227 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000008384 ID=EMLSAP00000008384|Name=EMLSAP00000008384|organism=Lepeophtheirus salmonis|type=polypeptide|length=333bp MRSYHTNLXXXXXXXVKSVKGQXTDFKGHQGPVRSVDFNSDGSKXLSASD DKSIKLWTVEKQRFIKSFNGHNNWVRSAKWSXBQKXIASVSDDRSLKLFD ENTGKEIHSFNEPGRGFGQCLSFHPSGSCIAIGTSDKKVKMYDIRTMKLH QSYTSHTGPVNQVAFHPSGCYLLSCSSDGFVKMFDIIEAQPVYGLTGHKE EVTAIEFSPKGEYFSSGGSDNAVFVWKSNIDSSSSNSLKDKNVKDGNTVR ALSELDLNKSDYENIEKQSILKKNPLEQDVDTTTLKAEINRLNQKVETLT QTIFYMEKRMTIVEEQLKLYTDPSIGESETCEY back to top
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