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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 272..293 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 53..209
e-value: 1.2E-52
score: 177.1 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 238..402
e-value: 6.8E-12
score: 44.5 |
| None | No IPR available | PANTHER | PTHR18934 | ATP-DEPENDENT RNA HELICASE | coord: 29..707 |
| None | No IPR available | SUPERFAMILY | 51735 | NAD(P)-binding Rossmann-fold domains | coord: 788..1030 |
| None | No IPR available | TMHMM | TMhelix | | coord: 755..777 |
| IPR003593 | AAA+ ATPase domain | SMART | SM00382 | AAA | coord: 68..239
e-value: 0.0054
score: 26.0 |
| IPR014001 | Helicase, superfamily 1/2, ATP-binding domain | SMART | SM00487 | DEXDc | coord: 51..235
e-value: 1.5E-28
score: 110.9 |
| IPR014001 | Helicase, superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 63..226
score: 19.324 |
| IPR007502 | Helicase-associated domain | SMART | SM00847 | HA2 | coord: 451..541
e-value: 9.5E-33
score: 124.8 |
| IPR007502 | Helicase-associated domain | PFAM | PF04408 | HA2 | coord: 452..541
e-value: 8.5E-27
score: 93.0 |
| IPR001650 | Helicase, C-terminal | SMART | SM00490 | HELICc | coord: 273..390
e-value: 2.1E-16
score: 70.5 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 296..389
e-value: 1.9E-11
score: 43.5 |
| IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 251..431
score: 17.141 |
| IPR016040 | NAD(P)-binding domain | GENE3D | 3.40.50.720 | | coord: 788..995
e-value: 7.2E-32
score: 109.9 |
| IPR011709 | Domain of unknown function DUF1605 | PFAM | PF07717 | OB_NTP_bind | coord: 575..678
e-value: 6.4E-30
score: 103.1 |
| IPR002198 | Short-chain dehydrogenase/reductase SDR | PFAM | PF00106 | adh_short | coord: 793..919
e-value: 3.0E-11
score: 43.3 |
| IPR011545 | DNA/RNA helicase, DEAD/DEAH box type, N-terminal | PFAM | PF00270 | DEAD | coord: 65..209
e-value: 9.0E-5
score: 21.9 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 31..645 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000008555 ID=EMLSAP00000008555|Name=EMLSAP00000008555|organism=Lepeophtheirus salmonis|type=polypeptide|length=1076bp
MPKHRLDLDGASSSKRPKDESPSSTKPGLKMNPHSALPYTPRYFELFRKR
ITLPVWEYRDKFLDLLGQHQCICLVGETGSGKTTQIPQWCAEYASKERKS
VACTQPRRVAAMSVAQRVSEEMDVSLGQEVGYSIRFEDCSGPRTILKYMT
DGMLLREAMSDPMLDAYKVILLDEAHERTLATDILMGVLKTVTTHRNDLK
LVIMSATLDAGKFQNYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAXIR
TVIQIHMCEEQEGDCLLFLTGQEEIEEACKRIKREVDNLGNEIGDLKCIP
LYSTLPPNLQQRIFEPAPGRKSNGAVGRKIVVSTNIAETSLTIDGVVFVI
DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTE
KAFKNEMQENTYPEILRSNLGSVVIQLKKLGIDDLVHFDFMDPPAPETLM
RALELLNYLAALDDDGNLTELGAIMAEFPLDPQLAKMLIASCENNCSNEI
LSITAMLSVPQCFVRPNXAKKXADDSKLRFAHIDGDHLTLLNVYHAFKQN
MDDPQWCYDNFVNYRSLKSADNVRQQLCRIMDRFNLKRTSTDFASKDYYV
NIRKALCAGFFMQVAHLERSGHYLTVKDNQIVQLHPSTCLDHKPEWVLYN
EFVLTTKNYIRTVTDVKPDWLIKAAPQYYDMNNFPQFIFCSWKAFIMLSS
TWKIFLEEFYLYLKSYFPLFWQLKNGVDFSFWKGSELVKSLINHLLSHFQ
KVPLSFRILFFVVLSWIVIFLVIRALIRSSKSLCNCSGDMRGKTVLITGA
NTSIGFEMTLDLLKRGSRVIMACKSLRAGIEACKKXIHRTGQSNIIVKKL
DLSSLESVRFFSECILKEEERLDVLVLQETMLLSKKYTTEDNLELLMANN
YFGHFLLTNLLYPILSKSGRISSPSRIVIRLHSCHRWGNVDINNLNSESS
FENFRAFASSQRASMYMARQLSQKLNPKTITVNCFESAMMKVEPNDGVPY
LHGHKDITSFIKCFFDFTPYEASQTGIHLCVSEVIKPGNIYFSCKSATDL
NNGDERDEIKSVQLWNKTLEILEELS back to top
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