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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 36..50 score: 38.27 coord: 264..278 score: 40.4 coord: 213..227 score: 39.34 |
IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 10..49 e-value: 2.6E-6 score: 37.0 coord: 280..319 e-value: 7.9E-12 score: 55.3 coord: 187..226 e-value: 4.5E-10 score: 49.5 coord: 229..277 e-value: 7.6E-7 score: 38.7 coord: 322..360 e-value: 0.53 score: 18.7 coord: 104..143 e-value: 6.9E-9 score: 45.5 coord: 64..102 e-value: 5.0E-4 score: 29.4 coord: 146..184 e-value: 0.021 score: 24.0 |
IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 189..225 e-value: 2.4E-12 score: 46.1 coord: 106..143 e-value: 1.0E-8 score: 34.6 coord: 151..182 e-value: 0.0062 score: 16.2 coord: 232..277 e-value: 1.1E-7 score: 31.3 coord: 75..102 e-value: 3.2E-5 score: 23.5 coord: 281..319 e-value: 1.1E-12 score: 47.1 coord: 15..49 e-value: 2.2E-7 score: 30.3 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 287..328 score: 16.022 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 111..152 score: 13.65 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 77..102 score: 9.673 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 236..286 score: 11.244 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 17..58 score: 13.215 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 194..235 score: 15.889 |
IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 14..198 e-value: 7.2E-42 score: 142.7 |
IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 199..362 e-value: 5.8E-48 score: 162.8 |
None | No IPR available | PANTHER | PTHR22846 | WD40 REPEAT PROTEIN | coord: 1..363 |
None | No IPR available | PANTHER | PTHR22846:SF9 | SUBFAMILY NOT NAMED | coord: 1..363 |
IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 264..278 |
IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 130..144 |
IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 17..328 score: 54.76 |
IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 73..358 |
IPR011047 | Quinonprotein alcohol dehydrogenase-like superfamily | SUPERFAMILY | 50998 | Quinoprotein alcohol dehydrogenase-like | coord: 15..102 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000009105 ID=EMLSAP00000009105|Name=EMLSAP00000009105|organism=Lepeophtheirus salmonis|type=polypeptide|length=363bp MDIDTNIEIPAEKANVLKGHNEEAFKCAWNPMQDLLVSGSADSTARIWHM EDSQQWDIILKHGKGREDCYIPCTTDVTSLDWNSSGSLLATGFYDGIARI WSTTGKLEKTLGKHKGPIFGVKWNKSGNYILSASEDRTTIIWDSQTGNHN QQFAFHSAPILDVDWQTDESFASCSKDKCIHVCKLGVEKPIKSFYGHTNE VHSIKWDPQGKFLASGSNDTTLKVWCMDKESHVHDLKAHSKAIYTIKWSC TGPGTNNPNADLVLVSASYDSTVRLWDVERGSCLHTLTRHQETVSSVAFS PDGKFLASGSYDKFVYIWSTVNGKLVRCYKGTGAIYEVCWNYRGDKVGAC ASDGNVFVLDLRR back to top
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