EMLSAP00000009520, EMLSAP00000009520 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000009520
Unique NameEMLSAP00000009520
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length230
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006028Gamma-aminobutyric acid A receptorPRINTSPR00253GABAARECEPTRcoord: 162..183
score: 53.02
coord: 128..149
score: 56.72
coord: 102..122
score: 53.69
IPR006202Neurotransmitter-gated ion-channel ligand-bindingPFAMPF02931Neur_chan_LBDcoord: 1..57
e-value: 1.5E-9
score: 37.2
IPR006202Neurotransmitter-gated ion-channel ligand-bindingGENE3D2.70.170.10coord: 1..101
e-value: 8.4E-20
score: 70.5
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 1..98
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 106..200
e-value: 1.1E-32
score: 113.6
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 101..198
NoneNo IPR availableGENE3D1.20.58.390coord: 102..193
e-value: 5.1E-40
score: 135.7
NoneNo IPR availablePANTHERPTHR18945:SF320SUBFAMILY NOT NAMEDcoord: 1..211
NoneNo IPR availableTMHMMTMhelixcoord: 164..186
NoneNo IPR availableTMHMMTMhelixcoord: 99..121
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 1..211

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000009520 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000009520EMLSAT00000009520-705367Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000009520 ID=EMLSAP00000009520|Name=EMLSAP00000009520|organism=Lepeophtheirus salmonis|type=polypeptide|length=230bp
MDLKLYPLDRQVCEMRIASYGWTTDDLIYRWKSKDPVQFVQDLNLPRFKL
ESFSTSYCNSKTNTGSVILYTEFPIVKLVFFNSGEYSCLKINLVFKREFS
YYLLTIYVPSCMLVIISWVSFWLDSKSVPARVALGVTTLLTMSTQTAGVN
RSLPPVAYTKAIDVWSGACVIFVFSALLEFAFVNYASRHDRRKGRKSRSA
MNYNMDDDEIDYDQGLDCTSRIRSHYGKFE
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