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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 136..173
e-value: 0.14
score: 21.3
coord: 226..268
e-value: 320.0
score: 1.2
coord: 644..681
e-value: 320.0
score: 1.2
coord: 313..352
e-value: 1.1E-4
score: 31.6
coord: 271..310
e-value: 92.0
score: 4.6
coord: 441..483
e-value: 2.3E-8
score: 43.8
coord: 86..125
e-value: 320.0
score: 1.2
coord: 553..588
e-value: 11.0
score: 10.6
coord: 46..84
e-value: 130.0
score: 3.6
coord: 490..526
e-value: 15.0
score: 9.6
coord: 355..394
e-value: 4.1E-6
score: 36.3 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 358..394
e-value: 2.4E-6
score: 27.0
coord: 141..168
e-value: 0.0038
score: 16.9
coord: 320..352
e-value: 3.4E-4
score: 20.2
coord: 444..483
e-value: 3.3E-10
score: 39.3 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 448..492
score: 14.084 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 362..403
score: 11.645 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 320..361
score: 12.848 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 19..201
e-value: 1.8E-17
score: 62.5 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 449..602
e-value: 7.7E-27
score: 93.2
coord: 653..678
e-value: 7.7E-27
score: 93.2 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 202..448
e-value: 9.1E-40
score: 135.7 |
| IPR007148 | Small-subunit processome, Utp12 | PFAM | PF04003 | Utp12 | coord: 722..827
e-value: 2.5E-15
score: 56.1 |
| IPR027145 | Periodic tryptophan protein 2 | PANTHER | PTHR19858 | WD40 REPEAT PROTEIN | coord: 1..872 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 470..484 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 300..535
score: 32.852 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 18..352 |
| IPR011044 | Quinoprotein amine dehydrogenase, beta chain-like | SUPERFAMILY | 50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | coord: 559..686 |
| IPR011047 | Quinonprotein alcohol dehydrogenase-like superfamily | SUPERFAMILY | 50998 | Quinoprotein alcohol dehydrogenase-like | coord: 242..606 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000010448 ID=EMLSAP00000010448|Name=EMLSAP00000010448|organism=Lepeophtheirus salmonis|type=polypeptide|length=873bp
MNNYQFKNLYGTVYRKGNLCFSRDGGTLLSPVGNKISFYNLEHGKSRTLD
YNFRFDVSFMALDPSPSSKTLFVATSNGDLHVCSLEKNVVLHRETTDRRX
LXAKFSPDGKFIAVSKEDTSTLIYEAETFKQPRFGPLGLHKVLQGQMSSV
TKLAWSDNSEWIASGSDSTRIYSLLSDKVYCLGSGSEVVHIAFTDTSPLS
CHTLNSSGHLNQWEISEETEKFTRSSRHFIKDFLQDKNMAFEVTSADYHP
CMDILVAGYSEGSFVVLQLPDVSLIHSLNMNTCISTININCSGDWIALGS
SSAGSLLVWEWKSETYIMKQKGHYNNLESLSYSRDGIMVATGGSDGKVKX
WNSSSGFCFVTFSEHSSPVSGVAFTSNNKALISSSLDGTVRAFDLIRYRN
FRTFASPKPVQFACVAVDATGELIAAGAKDVFDIYLWSLKTGRLLEVISG
HEGPVNSLSFSPSITSSSTLVSASWDQTMRIWNSLESNSTSSEVINLGSD
GIAVAFRPDGLEVAVATLNGQLSIFDLKTGNQIGTIEGKDDLGAGRADSD
LITASKSKESQYFRTLAYSTNGKFIIAGGSSKFICLYHVKESLLVKKFEI
TQNRDLDAMDDVISRKSASEFGNLALVEDRGDDDVMQLPGARKDEKSARS
VHPEIKVTDAQFAPTGREFAITTTEGLLVYSLDVDTVFDPTDLEIDITPS
YVIQQLNRKQYSTALFGSLKLNETKLIRQVIETIPFESSVFILETFPDKY
VNQLLTFFGKELETSRHLEFYSLWIQSFFRFKGGSLIKKNGKELYPCLNL
LQKSLLVRSKDLAQLCDQNSYTASFLLAMGKIKRKKNLSILEKDDGSESM
EENEFELDDIVMGGDEQFVSNWD back to top
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