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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 87..101
score: 39.45
coord: 42..56
score: 34.72
coord: 211..225
score: 33.38 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 185..224
e-value: 3.4E-7
score: 39.9
coord: 103..141
e-value: 76.0
score: 5.1
coord: 60..100
e-value: 1.2E-10
score: 51.4
coord: 16..55
e-value: 5.1E-7
score: 39.3
coord: 227..266
e-value: 2.1
score: 14.9 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 65..100
e-value: 4.7E-10
score: 38.8
coord: 20..55
e-value: 4.3E-8
score: 32.6
coord: 239..259
e-value: 0.0081
score: 15.9
coord: 187..224
e-value: 4.0E-9
score: 35.8 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 67..109
score: 15.087 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 192..233
score: 12.915 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 23..64
score: 10.642 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 15..133
e-value: 5.6E-30
score: 103.5 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 134..301
e-value: 2.9E-32
score: 111.0 |
| None | No IPR available | PANTHER | PTHR22839 | THO COMPLEX SUBUNIT 3 (THO3) | coord: 5..318 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 87..101 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 23..275
score: 26.656 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 16..301 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000011332 ID=EMLSAP00000011332|Name=EMLSAP00000011332|organism=Lepeophtheirus salmonis|type=polypeptide|length=319bp
MVMLEEWEELQNRFRKNQKTREHSAHSSKVHSVNWSCDGRKLASGSFDKT
VCLFSLSNDRLNKEHTYRGHGDSVDQLCWHPSNPDLLATASGDKSVRIWD
ARASKSISTIHTKGENINISWSADGRTIAVGNKEDLVTFIDCKTHKIKHE
EAFKFEVNEISWNHASDLFFLTNGHGCIHVLNYPEMELKYVLQAHPGNCI
CIKFDPTGKYFAVGSADALVSLWDANELACVRTFSRLDWPVRTISFSYDG
KLLASASEDLQIDVGHVESGNKVCDVSVTSPTFTIAWHPKRYLLAYACDD
KDKYDHRDAGSLKVXGISF back to top
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