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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 96..134 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 12..59
e-value: 8.2E-11
score: 41.1
coord: 185..235
e-value: 8.2E-11
score: 41.1
coord: 316..361
e-value: 8.2E-11
score: 41.1 |
| None | No IPR available | PANTHER | PTHR11472 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER | coord: 1..809 |
| None | No IPR available | SUPERFAMILY | 52374 | Nucleotidylyl transferase | coord: 878..1013 |
| IPR006555 | ATP-dependent helicase, C-terminal | SMART | SM00491 | HELICc2 | coord: 649..776
e-value: 3.2E-37
score: 139.6 |
| IPR006555 | ATP-dependent helicase, C-terminal | PFAM | PF13307 | Helicase_C_2 | coord: 631..789
e-value: 9.6E-45
score: 152.4 |
| IPR006554 | Helicase-like, DEXD box c2 type | SMART | SM00488 | DEXDc2 | coord: 8..394
e-value: 9.3E-93
score: 324.1 |
| IPR004821 | Cytidyltransferase-like domain | TIGRFAM | TIGR00125 | TIGR00125 | coord: 879..949
e-value: 6.0E-17
score: 59.4 |
| IPR004821 | Cytidyltransferase-like domain | PFAM | PF01467 | CTP_transf_2 | coord: 881..1010
e-value: 8.5E-15
score: 55.0 |
| IPR010614 | DEAD2 | PFAM | PF06733 | DEAD_2 | coord: 190..372
e-value: 8.7E-50
score: 168.4 |
| IPR013020 | DNA helicase (DNA repair), Rad3 type | TIGRFAM | TIGR00604 | TIGR00604 | coord: 133..802
e-value: 1.6E-142
score: 474.3 |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | GENE3D | 3.40.50.620 | | coord: 877..1003
e-value: 6.7E-36
score: 122.7 |
| IPR027076 | ATP-dependent RNA helicase CHL1 | PANTHER | PTHR11472:SF5 | CHL1 HELICASE HOMOLOG | coord: 1..809 |
| IPR002464 | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site | PROSITE | PS00690 | DEAH_ATP_HELICASE | coord: 345..354 |
| IPR014013 | Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type | PROSITE | PS51193 | HELICASE_ATP_BIND_2 | coord: 7..402
score: 25.721 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 186..221
coord: 11..63
coord: 319..357 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000011382 ID=EMLSAP00000011382|Name=EMLSAP00000011382|organism=Lepeophtheirus salmonis|type=polypeptide|length=1138bp
MDPIPTPKSFPFPYDEPYPIQKDFMKSLFRCLDNGKLGIFESPTGTGKSL
SLICGTLLWFKQREEARKKYLKNKIEEKSDVNSDGEEDWFSVALRNRAKN
EEKLEYKLELKFLEEKQQRLEEIRQKSKLKKDVQFHHYYEKKGSSMSDIN
ENEDEDHDLVLNDYSSGEEDGGEENYPPEDQVDYSQRIYYCSRTHSQLSQ
FVKEVKKSPYADSIRLISLGSRKNACINDSVRKLKHNASMNEKCIDLQKG
LQKTQVDKDKRASKKKKTTNGCPFYSQIRIEALKNMALTQISDIEDLVSK
GKKTQTCPYYSSRHASEDAELVVIPYNTLLHKSTREACGIKLKNSVLIID
EAHNLLETIAHIHSCEIKGSHLKDIKFQLQGYLEKFRTRLKPRNILYIKQ
LIFIVTNFIKVMTSSQILTTMAFLQDSQIFNIDLFKILQYILKSKLSYKL
RGFSQKYSNEAQKPSNTQTFLNSMKKNYKEESPAQGVRPETESDHSDGPS
QINILFSFISNLVEDLDDGRVVITHSNDFSGSSIKFILLNPTNHFKDLVK
ECHSIIVAGGTMEPVDEFKKRLFISSGATTERIHHFSCGHIIPESNILPI
VLHRGPSGKLLDFSFSLRDLKETYEEILRILSNLVTIIPGGIVVFFPSYH
YETKVHAFLSKSSTWNNLVAKKRSYIESPRIQMQWKSVVGGKMSEGINFS
DDMGRCVLMIGLPFSNSKSPELKEKMEYLNRTEGSNAGNSYYENSCMKAV
NQSIGRAIRHGNDYATIILADHRYSRGNIHELLPGWIRDKVWNSDKFGPV
VPRIRQFFKILLHQYRLYLLKMSRKREAEGSSEQRLXTHLGPAPFDSDKX
AAIERESQDYSIKITLDMARSGLSPRKVRVYADGIYDLFHQGHARQLMQA
KNVFGPRTEVYLLVGCTSDELTNKRKGKTVMSEEERYEAIRHCRYVDEVV
RDAPWECDDDFLSFHKIDFVAHDEAPYVTESGSDVYAALKEKGMFVATQR
TDGVSTSDVVARIVKDYDKYIRRNLARGYTRQDLNVSFFHGNRLKLGIKV
DEVKEKTKGFIERKKEEYASKIEVTSKELIGTFMALFGARDWNFDQFWAH
SKERLSHALSPPASPSRNEDDDYDEDQPQPKRVKIDLS back to top
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