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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 154..168
score: 38.27
coord: 382..396
score: 44.23
coord: 424..438
score: 34.11 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 222..261
e-value: 1.2E-8
score: 44.8
coord: 398..437
e-value: 8.1E-12
score: 55.3
coord: 128..167
e-value: 1.4E-7
score: 41.2
coord: 264..302
e-value: 0.098
score: 21.8
coord: 305..344
e-value: 1.9E-10
score: 50.7
coord: 347..395
e-value: 1.1E-6
score: 38.2
coord: 440..478
e-value: 0.077
score: 22.1
coord: 171..220
e-value: 1.1E-4
score: 31.6 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 224..261
e-value: 1.1E-7
score: 31.3
coord: 307..343
e-value: 9.3E-13
score: 47.4
coord: 350..395
e-value: 1.7E-7
score: 30.7
coord: 193..220
e-value: 1.9E-6
score: 27.4
coord: 399..437
e-value: 4.8E-12
score: 45.1
coord: 133..167
e-value: 1.2E-8
score: 34.3
coord: 266..300
e-value: 0.12
score: 12.2 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 135..176
score: 14.184 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 405..446
score: 15.855 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 195..220
score: 10.742 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 354..404
score: 10.275 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 312..353
score: 14.753 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 229..270
score: 13.282 |
| IPR006594 | LisH dimerisation motif | SMART | SM00667 | LisH | coord: 4..36
e-value: 2.6E-6
score: 37.0 |
| IPR006594 | LisH dimerisation motif | PROSITE | PS50896 | LISH | coord: 4..36
score: 10.707 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 207..479
e-value: 2.5E-76
score: 255.8 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 81..206
e-value: 3.9E-17
score: 61.3 |
| IPR013720 | LisH dimerisation motif, subgroup | PFAM | PF08513 | LisH | coord: 6..32
e-value: 3.6E-9
score: 35.9 |
| None | No IPR available | PANTHER | PTHR22846:SF9 | SUBFAMILY NOT NAMED | coord: 1..481 |
| None | No IPR available | PANTHER | PTHR22846 | WD40 REPEAT PROTEIN | coord: 1..481 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 248..262 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 382..396 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 135..446
score: 53.732 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 192..476 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 133..178 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000011537 ID=EMLSAP00000011537|Name=EMLSAP00000011537|organism=Lepeophtheirus salmonis|type=polypeptide|length=481bp
MSFSTDEVNFLVYRYLQEAGFSHSAFVFGQESHVSQSNINGALGLLYVEA
EISTGEDGSERLIDGLSLIDAVMPDVVASRKQQQQXDHKSSPVESVKLED
RQQTASAPSDDHPQQQHPMDIDTNIEIPAEKASVLKGHDSEVFICAWNPM
QDLLASGSGDSTARIWHMEDSQQREIILKHCIHRGGQEVPSNKDVTSLDW
NSSGSLLATGSYDGFARIWSTTGKLEKTLGQHKGPIFALKWNKSGNYILS
AGVDRTTIIWDSQTGNHKQQFAFHSAPALDVDWQTDESFASCSTDKCIHV
CKLGVEKPIKSFYGHTNEVNAIKWDPQGKFLASCSDDMTLKVWCMDKESH
VHDLQAHSKEIYTIKWSCTGPGTNNPNADLVLASASFDSTVRLWDVERGS
CLHXLXRHKEPVYSVAFSPDGKFLASGSFDKCVHIWSTVTGKLVHSYKGT
GGIFEVCWNSRGDKVGASASDGTVFVLDLRR back to top
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