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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR000504 | RNA recognition motif domain | SMART | SM00360 | RRM | coord: 803..875
e-value: 1.4E-24
score: 97.6
coord: 711..782
e-value: 2.4E-18
score: 76.9 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 804..872
e-value: 1.1E-18
score: 66.4
coord: 712..775
e-value: 8.4E-13
score: 47.6 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 802..879
score: 19.024 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 710..786
score: 16.364 |
| IPR003107 | RNA-processing protein, HAT helix | SMART | SM00386 | HAT | coord: 105..136
e-value: 0.28
score: 20.3
coord: 278..310
e-value: 190.0
score: 6.0
coord: 142..178
e-value: 130.0
score: 7.2
coord: 313..345
e-value: 2.2
score: 17.3
coord: 438..470
e-value: 20.0
score: 13.2
coord: 348..384
e-value: 3.2
score: 16.7
coord: 70..99
e-value: 12.0
score: 14.8
coord: 472..507
e-value: 170.0
score: 6.4 |
| IPR008669 | LSM-interacting domain | PFAM | PF05391 | Lsm_interact | coord: 924..941
e-value: 1.7E-5
score: 23.9 |
| IPR011990 | Tetratricopeptide-like helical | GENE3D | 1.25.40.10 | | coord: 35..71
e-value: 4.6E-5
score: 21.6
coord: 318..377
e-value: 4.6E-5
score: 21.6 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 794..885
e-value: 8.0E-26
score: 90.0 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | GENE3D | 3.30.70.330 | | coord: 681..792
e-value: 6.2E-23
score: 80.5 |
| None | No IPR available | PANTHER | PTHR23269:SF0 | SUBFAMILY NOT NAMED | coord: 1..888 |
| None | No IPR available | PANTHER | PTHR23269 | RIBONUCLEOPROTEIN-RELATED | coord: 1..888 |
| None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 800..883 |
| None | No IPR available | SUPERFAMILY | 48452 | TPR-like | coord: 45..537 |
| None | No IPR available | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 694..792 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000011736 ID=EMLSAP00000011736|Name=EMLSAP00000011736|organism=Lepeophtheirus salmonis|type=polypeptide|length=942bp
MSLEEMDQDGDLVNDEQDNDSLDDEDMEDAREKELNEKLKAVNETLKNNP
YDYQSHIDKISVLKSLGELEELRLARQTFSKLYPLSVELWLTWLQDEQRL
ASSPKERKEVCHLFKRAVQDYLSVDIWIEYCSFILGDVGSADGVSSAREV
FEEAVAAIGLHVGKGYLIWGAYRDFEVAXMNLHNKGYEFVFKVFQRQLAI
PLLNMEKSIEELKDFEDIPDFKRFSSSSSLSSVYQNSLKKLQGKEEFENA
LLQTVGDSEANFIKYSEYIQALRDNKSSSPPEIQNLYERRITDHCLNPIS
WIEYLNYLDSVLKIQSIAMSVYRRAIRNCPWSGNLWCNYIRALEVYGSDL
KEITKVFEEALASGFSDPVDYSRIWINYISYFRRKIDDGNESEDSSKAKT
DLKEIFERAIDHLDGIPNSDPELKLSRFWASVSGDRLRDMETARKCWAKI
VHLIGDRMIYWTEYVTLEKLYGDSKHLRKVFLRGMEKIKDFPDYFAHLWR
QFELEEGDLTQLQNAEDKIRKCLLINEERLAKKTAQTQEFKKSQSEKIEK
KKDKDKDRRREKRRFEAEDRQTQRKRKMGVIEPQGFQVIIEEDNDNGGKK
LKKDSDENVFKAPFPFENKALYQRNIEETQIKHLSGCSQMKENEGAVKPP
PGYTQPEGTKKTVKPPPGYQKEVKPPPGFKSQHKSTAEIENGSDAGRPNP
EFKDKEESDRTIFLSNLSFEVTEEEIREMMESSGPVKEVRLAKNFNGKSR
GFAYVDFVYSESVSKSILRDNELLKERPVYISMCDPNKKGHQFKYATVLE
KNKLFVRGLNFSTSKEDLIELFSTYGKVKEVRVVTFRNGKSKGIAYVDFE
NESDATNAIMKIDGMNFMGHFINVAFSNPPEKKKDMEPVSCLGGGVLKKQ
APFLPRSILSKTRDVTEGSSTSSTANTTPKSNADFRNLLLKK back to top
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