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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 884..905 |
| None | No IPR available | COILS | Coil | Coil | coord: 4..39 |
| None | No IPR available | COILS | Coil | Coil | coord: 55..76 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 310..458
e-value: 8.3E-14
score: 50.7 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 102..263
e-value: 3.1E-32
score: 110.9 |
| None | No IPR available | PANTHER | PTHR18934 | ATP-DEPENDENT RNA HELICASE | coord: 3..745 |
| IPR001650 | Helicase, C-terminal | SMART | SM00490 | HELICc | coord: 341..444
e-value: 1.1E-13
score: 61.4 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 349..443
e-value: 5.5E-11
score: 42.0 |
| IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 313..484
score: 15.563 |
| IPR014001 | Helicase, superfamily 1/2, ATP-binding domain | SMART | SM00487 | DEXDc | coord: 100..293
e-value: 1.3E-11
score: 54.6 |
| IPR014001 | Helicase, superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 112..280
score: 15.797 |
| IPR007502 | Helicase-associated domain | SMART | SM00847 | HA2 | coord: 504..600
e-value: 6.9E-5
score: 32.2 |
| IPR007502 | Helicase-associated domain | PFAM | PF04408 | HA2 | coord: 506..599
e-value: 2.1E-5
score: 24.3 |
| IPR011545 | DNA/RNA helicase, DEAD/DEAH box type, N-terminal | PFAM | PF00270 | DEAD | coord: 115..263
e-value: 1.6E-8
score: 34.1 |
| IPR011709 | Domain of unknown function DUF1605 | PFAM | PF07717 | OB_NTP_bind | coord: 661..743
e-value: 1.3E-5
score: 24.8 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 95..655 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000012177 ID=EMLSAP00000012177|Name=EMLSAP00000012177|organism=Lepeophtheirus salmonis|type=polypeptide|length=1044bp
MGPIERVKDLSNKFREDIKAIEDRIKKLSLDLKGKKKKKRNFLSKSLKER
KVETINALQAELETKLIEMEEFQSRILEISSLNTPNKEEKLNLEIDIFSK
HLPIYRFRSTILESIEKNDVTILVAETGSGKSTLVTQFLHTNDEDIVIYC
CQPRKLAANGLMEYTNTCLGLDPKKAIVAFDFNMWDTNYIPGRSKIVFTT
NNGLLSRWREDNCLKEIDVVIIDETHERTLSTDLLLGIMKKLNKCNHLRE
KSIKTLIMSATIDPSIFYNYFSSSEIKVNCISIPGKTFPVQVIYDEAPLS
NQPKDYVSRTTSKILEILKNKELGDVLAFLATPPEVEEAXDTLKVKLKST
NRNVKVYPLHSKVEINDQRKLFSKDGVLKKEQRVIISTNIAETSVTLPDI
TCVIDSGRHKEFSYDMVRNVGALTLSSISQSSALQRKGRAGRTRPGTCYR
LYTKNDYDNFISSSSPEILCLPMDQALLTLFHLGFSNPETFDFIDPPSRE
AISVGIDSLSSLGAIETHSSNTYLMTEIGNKMTRFNVIPKLAHLIVNTLS
LHKDLILDVLIICGVVSRGYSIFHRGEYLDAAQLKKLKFCNDKGDFITMI
DAFKLWYEVPMKRRGMWALENMISNKTMNEALKFVMNNLRIVETKFHHRI
PRNNRQIQFGCSKAKYGDIMKLIYSSFKKSIAVFAGHPKAGYINSINGDV
MKLHPTSSIYCLERSLKYVCYDKILTTSQTFIFHVSMVKSEWMDEDDIFI
KDQIIELKTVRKYEGYPMMGSSTIKKYVLHKLKKLRNDLNMKISINSVER
GITHFFEIDISLDKGSISTWCHPENESIVIPSVKNLLNAALEEVLNEKMN
IPLDTNSNLLVIGASGRAIYHLNSKSYLSFKIVHKNKSDKVEILIKEIQE
LMTKNSIDFDFFKRKGEPFFSFKQSQVGIQARSLVLEHYSDVLKCIWNPK
SLNQTSVWIIFSIYTYVSTDEVVKAFQEKIDLDMNTGAEVVAMPFKEYSK
VNFRVNVPSFEVGERIFNNCRNAYFASFKKWKFLSSTLSQDALL back to top
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