EMLSAP00000012523, EMLSAP00000012523 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000012523
Unique NameEMLSAP00000012523
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length994
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132LIMcoord: 259..311
e-value: 3.3E-14
score: 63.2
coord: 7..60
e-value: 2.7E-16
score: 70.1
coord: 132..192
e-value: 2.5E-8
score: 43.7
coord: 200..251
e-value: 1.1E-18
score: 78.1
coord: 68..119
e-value: 1.1E-14
score: 64.8
IPR001781Zinc finger, LIM-typeGENE3D2.10.110.10coord: 192..257
e-value: 1.0E-23
score: 82.7
coord: 7..67
e-value: 8.4E-21
score: 73.3
coord: 258..316
e-value: 9.2E-16
score: 57.1
coord: 68..125
e-value: 1.3E-16
score: 59.9
IPR001781Zinc finger, LIM-typeGENE3D2.10.110.10coord: 131..191
e-value: 1.7E-10
score: 40.3
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 260..314
e-value: 3.8E-10
score: 39.5
coord: 69..119
e-value: 1.3E-9
score: 37.8
coord: 201..256
e-value: 1.5E-14
score: 53.6
coord: 133..194
e-value: 7.7E-6
score: 25.7
coord: 8..62
e-value: 1.7E-13
score: 50.2
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 8..43
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 201..234
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 133..166
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 69..102
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 259..318
score: 8.494
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 6..67
score: 13.197
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 131..190
score: 7.781
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 69..126
score: 10.544
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 199..258
score: 13.533
NoneNo IPR availablePFAMPF13967RSN1_TMcoord: 354..507
e-value: 6.4E-19
score: 67.9
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 2..33
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 185..230
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 124..157
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 94..124
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 36..98
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 227..290
NoneNo IPR availableTMHMMTMhelixcoord: 868..890
NoneNo IPR availableTMHMMTMhelixcoord: 819..841
NoneNo IPR availableTMHMMTMhelixcoord: 354..376
NoneNo IPR availableTMHMMTMhelixcoord: 448..470
NoneNo IPR availableTMHMMTMhelixcoord: 733..755
NoneNo IPR availableTMHMMTMhelixcoord: 779..798
NoneNo IPR availableTMHMMTMhelixcoord: 494..511
NoneNo IPR availableTMHMMTMhelixcoord: 926..948
IPR003864Domain of unknown function DUF221PFAMPF02714DUF221coord: 662..993
e-value: 2.9E-60
score: 203.7
IPR017351LIM and senescent cell antigen-like-containing domain protein 1PANTHERPTHR24210FAMILY NOT NAMEDcoord: 8..317

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000012523 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000012523EMLSAT00000012523-708370Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000012523 ID=EMLSAP00000012523|Name=EMLSAP00000012523|organism=Lepeophtheirus salmonis|type=polypeptide|length=994bp
MNLERLSCGRCDEGLDPYGEVVNSSGELYHPECFVCVQCFRPFVDGVFYE
FEGRKYCEHDFNVLFAPCCGKCGEFIVGRVLKAMSSTWHPHCFTCQMCHK
ELADLGFIKNQGRALCHACNDKVKAQGLGKWMCQKCHSFIDDEPLRFKGE
TFHPYHFNCSFCGSELTSTAREVRARPGYTANELNELYCLRCHDKMGIPI
CGACHRPIEERVVTALGKHWHVEHFVCTKCEKPFLGSRHFERKGLAYCET
HYHQLFGNLCYVCNQVIQGDVFTALNKAWCVNHFACSSCDQKMTVKTKFY
EVDLKPVCKKCYDKLPLMMDDSLSDTQCLNPGLNSSSFPFSLSSNPYGGI
PQNILANFVAWTFLIVLFGILRRFAGNYGRLALMRISSPSIDSPWTQVFY
PNDLDGDMDEDSGGFYSWLISIFTLSDAKIRSRCGLDXVQYLSFQRHLIL
FTFFITLICMGVILPINFQGNLQGTKADFGHTTISNLRGDDHRLWIHVLL
SLLFLPLGILIMKRFSTTLKTEDGGACISSRTIMLAKVPRSFCTEPKISA
YFYRHHSNLEIDKIYIARDVSKLIPLYNKWNRVRLARIYCEVHDKDLVRL
ARIYCEVHDKDLLVSHGRLGLSTICCTTSEKAYDYYCSEEKKYFDQLVRC
EAIARNSSIGVAFITFKDKTSAQQVNNIYSNFLKKLKNYTRTKYSLENEI
KPWKWTIRLAPPPEDIYWENLDYDSHRLFIVKVILVNIALFGVLFFFTSP
AYILSQLQLFITTVFGTSDFRLPQKINDFVPTLMLWMLSALLPNIVAYSD
LLMGHWRRSVENIWIMKKIFFYLLFMVLILPSIGLTSLLAFARLLFYDNA
ISHPSKLKWNCIFLPDNGAFFVNYVITSALVGTGLELIRFTELFMYAVRM
WLAKSIAEVSSVRCANLFEFPFGYNYGWILLIFALTIAYAVVCPLITPFG
LFYLIMKHGVDRYNLYYAYKRSKINKNIHFLAVNCVIVSLLIQQ
back to top
Add to Basket