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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR015880 | Zinc finger, C2H2-like | SMART | SM00355 | ZnF_C2H2 | coord: 311..331 e-value: 29.0 score: 9.2 coord: 253..275 e-value: 0.0012 score: 28.1 coord: 397..420 e-value: 0.015 score: 24.5 coord: 281..304 e-value: 1.1 score: 18.3 coord: 197..219 e-value: 0.0025 score: 27.0 coord: 169..191 e-value: 0.0022 score: 27.3 coord: 225..247 e-value: 2.4E-4 score: 30.4 |
IPR007087 | Zinc finger, C2H2 | PFAM | PF00096 | zf-C2H2 | coord: 397..420 e-value: 0.01 score: 16.0 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 199..219 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 227..247 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 399..420 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 171..191 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 283..304 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 255..275 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 169..196 score: 13.38 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 281..309 score: 11.177 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 397..425 score: 9.556 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 225..252 score: 14.42 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 253..280 score: 16.311 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 197..220 score: 12.154 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 165..188 e-value: 1.5E-6 score: 27.2 coord: 390..418 e-value: 1.0E-4 score: 21.3 coord: 273..304 e-value: 4.5E-11 score: 41.7 coord: 189..221 e-value: 1.7E-12 score: 46.2 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 225..253 e-value: 1.0E-11 score: 44.2 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 254..272 e-value: 1.4E-13 score: 50.0 |
None | No IPR available | PFAM | PF13465 | zf-H2C2_2 | coord: 212..234 e-value: 2.7E-4 score: 20.9 coord: 267..291 e-value: 6.9E-6 score: 25.9 coord: 183..207 e-value: 2.0E-5 score: 24.4 coord: 239..263 e-value: 7.3E-8 score: 32.2 |
None | No IPR available | PFAM | PF13894 | zf-C2H2_4 | coord: 312..332 e-value: 0.11 score: 12.7 |
None | No IPR available | PANTHER | PTHR11389 | ZINC FINGER PROTEIN | coord: 164..572 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 224..281 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 168..219 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 389..424 |
None | No IPR available | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 275..329 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000012860 ID=EMLSAP00000012860|Name=EMLSAP00000012860|organism=Lepeophtheirus salmonis|type=polypeptide|length=945bp MPDHHRTKASSNAFDSPLSLVVAHEDRLKEEEKNHGSSPGRSSGFSDGSG DENYHRQRLASEGDLPLSLVVRSLGEIESYDSGHEEDHHHHAHHRVILEE PDVTIAKVMVNAGSEKSGIKIKDFAKLLCEKSEDNALSSEVHSEYSSYEE VHPQAWNGSSGXLSGKESFPCEFCDKIFINKYHLQSHLVTHTGERSFECR KCHKTFGRKSTLRAHMTTHTKVSNFMCPICDKACNDNNSLEEHIRMHTGE KPFVCSICSKSYARKSHLNVHYRVHTGERPFVCLNCRKDFTEKRFLNDHI QTAHSGQDGPLKCPNCFREFAYKTSLKQHLKKQMCVKNLSRTGNLANNNG GNNNSNSNNNNNFSNNGSPNISCGNPSSNLSNNNNNTGSSHPHSKQFSCP FCEKSYSWKQTLKQHVSMYHRNKVHTDEFWKYELTKHRRAVVDSKTNEDM WKKQLGKHGSEQKADNTASNEMWLEQINQSSNPSKSALSAEMKLLALQSL QSSLKLMKMQEEGGEQSSVNPQKDEQLPIASPVAEAAAVVPVPPPPPPLP VPADPPSSQQDAGYLSLLAHISSAQRRVAEKEEALRSDSPSLPEEPAAKR TQMWLAQLGRYRQKSVQYEIEKNHEELWEEQIAKIKQNPVKSPLEPVEIT IDDDEEEVELNREEEDDEEGGYLHLGGVEEHEQEHHHHVPGLIMTEEANI KEERAAEEERIIMGEPHDPLQLQLQAYEDQRGVSPPPSSPHQLKHIVSLP NTHSPPSTCKMVPLMSALQVQATHQEDDPELISSDGSVLKSILLDRIGRK RPSLDPTPVPPKANHQEDSTDILRRRLLGLKEEPVLLVVDVESDNNNKSS NSSNSNIKNSSNKISNNLRDSNIKKDEQSSSPENNKSSPKKKEEEGKSSI IEQKEHAPRQSNSSSPKPQRKDSTFAHTSVLKHLLHRYTESHNME back to top
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