transcription factor hnf-4 homolog, maker-scaffold1013_size70870-snap-gene-0.16 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000007741 (supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-1 gene:EMLSAG00000007741 transcript:EMLSAT00000007741 description:"maker-LSalAtl2s450-snap-gene-2.9") HSP 1 Score: 104.375 bits (259), Expect = 1.312e-23 Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 0 Query: 195 VLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICR----FYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSK 280 +L + C +CGD+++GKHYG SCDGC GFF+RS+ +++ Y C+ F C + K RNQCR CRL+KC M D+VQH R SK Sbjct: 103 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRQRIYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHERGPRKSK 192 HSP 2 Score: 87.0409 bits (214), Expect = 3.245e-18 Identity = 59/191 (30.89%), Postives = 99/191 (51.83%), Query Frame = 0 Query: 346 LLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSL--HLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEM 534 L + V W K + F LS DQ+ LL+ + L+ +++ ++ L+++LL + ++ + +D +D VV ++ ++ + E++ FRQL D TE LKAIV F P GL D +E L+ Q Q L DY+ +R RFG++LL +P L+ I + IE + G + L+Q+M Sbjct: 442 LFMAVRWVKCLAPFQTLSSKDQLLLLQESWKDLFLMHLSQWAIPWDLSNLLLSRHASLVDR----------SDVEDHVV-DMEIKTVQEIMCRFRQLSPDGTECGXLKAIVLFKPETAGLNDFHPVEMLQDQAQCILGDYVRNRYSRQPTRFGRLLLAIPLLRMIRANTIENFFFRETVGDTSVIRLIQDM 621
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 102.064 bits (253), Expect = 1.848e-23 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 0 Query: 200 CAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYR--NCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTR 274 C +C D ++GKHYG +CDGC GFF+RS+R+ + Y+C+ +C+V K RNQCR CRL++C+ GM D+VQH R Sbjct: 34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHER 110 HSP 2 Score: 83.1889 bits (204), Expect = 2.753e-17 Identity = 62/218 (28.44%), Postives = 102/218 (46.79%), Query Frame = 0 Query: 327 IETKQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIG-LRVMNELVTPFRQLLMDDTEFACLKAIVFFDPY---ARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEMLLGGAI 540 T L + ++ ++ + L + V WA+++PAF L DQ+ LL E LL + +L + L +QD + + L+ E + F+ + +D TEFACL+AI+ F + L D I L+ Q Q+ L YI+ RFGK+LL LPSL+S++ ++IE++ K G I+ ++ +M G I Sbjct: 233 FHTSGLRNPENVSETAARLLFMNVRWAQNVPAFTSLPYRDQLLLLEESWRELFLLSSAQFNLPVE----------------------LVASQDKSISVLSELKNFQEAIAKFQSMQVDTTEFACLRAIILFKTVLEEEKELRDTSSITSLQDQAQLTLSKYISXAYPGQPMRFGKLLLLLPSLRSVSGNVIEELFFKKTIGPIPIERIICDMXKAGXI 428
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6") HSP 1 Score: 101.293 bits (251), Expect = 6.897e-23 Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 0 Query: 200 CAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTP 284 C +CGDK +G HYG +C+ CKGFF+R+V+ K+ Y C R+CV+ K +R +C +CR +KC+ GMK ++V+H R R + P Sbjct: 186 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNKFGP 270
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000011488 (supercontig:LSalAtl2s:LSalAtl2s794:281844:292908:-1 gene:EMLSAG00000011488 transcript:EMLSAT00000011488 description:"maker-LSalAtl2s794-snap-gene-2.22") HSP 1 Score: 93.9745 bits (232), Expect = 4.583e-21 Identity = 91/364 (25.00%), Postives = 150/364 (41.21%), Query Frame = 0 Query: 231 KQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTR---------------------------DRISSKR----STPESESSNPSISGLSVTTLEKAELLSRHGQHGYDIQKDQLTNRE-IETK---------------------QLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTR----------GRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLL 531 K Y+C+ NC + +RNQC+ CR +KC+ MK ++VQ R + ISS+R ST ESSN I + T L K L + +I + N++ IET L S + + + L +V WAK +P+F + S++DQ LLR +LG + ++ +N+ L+ N + +D N + + M ++V R +D E+ LKA++ F P L + ++E+L+ Q + LE+Y + D R RFGK+LL ++ IT +E + K G +D ++ Sbjct: 1 KLDYVCKGNGNCTIDVARRNQCQSCRFKKCLMVKMKKEAVQQERTPRISCIKATQTTSYTFSNLKNKSSKANPISSRRLYLLSTSFRESSNTEI--IDDTYLTKNILSTVVNSKKENIVINIENNKKCIETILNAPSHKRTTPSFQFYPSPTITLLSENSLHEISVKLLFTVVHWAKSVPSFVEFSVNDQNVLLREAWSRLFILGTAQWAILINEEKLMLN---CEEKSKDHTNLLFHHAKK----------MTKIVQKIRDQNLDYNEYTILKALILFSPEGNNLIESHQVEKLQDQTLIMLEEYCSHN--DNRVNKPKYTFNLRRFGKLLLAFSNIFQITSKDVESLFFQKTLGSISVDRII 347
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23") HSP 1 Score: 94.3597 bits (233), Expect = 1.721e-20 Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0 Query: 192 NGNVLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTD 268 N + + C +CGDK++G HYG +C+GCKGFFRRS Y C +NC+V + RN+C+FCRL+KC+ GM D Sbjct: 39 NAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGMSRD 115
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 93.5893 bits (231), Expect = 3.468e-20 Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 0 Query: 104 WGGERMTELTQLGVIP------MVKLDSMGPMSTQTMTTTSQGTTFSVLTNMNLMPTIIAGEDIMDSSSSNPMDNHLASTEVVTSLEATHSPEANGNVLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRST 283 W G+R L ++G P +++D+ G + + TS N N P I S P DN+ S++ SL C IC D+ATG HYG +C+GCKGFF+R+V+ K+ Y C C + K +RN+C++CR +KC++ GM +V+ DR+ R++ Sbjct: 209 WAGDRSQLLDKMGPPPSSSTPSFLEMDNKGGLHIXSSXPTSXANI-----NSNNPPPI--------HQSGGPGDNNNPSSQPQQSLV---------------CMICEDRATGLHYGIITCEGCKGFFKRTVQNKRIYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVR--EDRMPGGRNS 364
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 82.4185 bits (202), Expect = 6.110e-17 Identity = 47/128 (36.72%), Postives = 67/128 (52.34%), Query Frame = 0 Query: 198 MNCAICGDKATGK-HYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAEL-LSRHGQHGYDIQKDQLT 323 M C +CGDKA HYG +C C+ FFRRSV K Y C + C++T R C+FCR +KC+++GMK V ++ S R+ + N + G +V E+ L H Q +Q D+LT Sbjct: 89 MVCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEK--SSRNLIKYVRKNKTTCGKNVNNNNTIEVNLVSHLQSNSAVQ-DRLT 213
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 78.1814 bits (191), Expect = 1.497e-15 Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0 Query: 200 CAICGDKATGK-HYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSV 270 C IC D A HYGA +C C+ FFRR+V Y C + C +TK+ R C+FCR KC++AGMK V Sbjct: 63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWV 134
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 76.2554 bits (186), Expect = 6.839e-15 Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 0 Query: 196 LPMNCAICGDKATGKH--YGAASCDGCKGFFRRSVRK---KQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSK 280 LP C ICG+ A GKH YG C C+ FFRRSV+ KQ C ++C++ R C+ CR +KC+ AGM+ V R+R S K Sbjct: 103 LPRLCQICGEVA-GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKK 191
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Match: EMLSAG00000005619 (supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1 gene:EMLSAG00000005619 transcript:EMLSAT00000005619 description:"maker-LSalAtl2s301-augustus-gene-3.7") HSP 1 Score: 73.1738 bits (178), Expect = 5.011e-14 Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0 Query: 200 CAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYI--CRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTR 274 C +C + A G H+GA +C+GCK FF R+ Q+ I C+ CVV K R C+ CRLRKC+ GM ++ R Sbjct: 57 CRVCEEPAAGFHFGAFTCEGCKSFFGRTC-NNQSVIQECKNNYRCVVDKKNRTACKACRLRKCIMVGMSKSGSRYGR 132
BLAST of transcription factor hnf-4 homolog vs. SwissProt
Match: gi|81888393|sp|Q5BJR8.1|RXRG_RAT (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 243.432 bits (620), Expect = 1.069e-72 Identity = 126/343 (36.73%), Postives = 199/343 (58.02%), Query Frame = 0 Query: 193 GNVLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHGQHGYDIQKDQLTNREIETKQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEML 535 G+++ CAICGD+++GKHYG SC+GCKGFF+R++RK Y CR ++C++ K +RN+C++CR +KC+ GMK ++VQ R R S +R+ E+E ++ + V + +AEL + + + + +E+ + +I + +QL LVEWAK IP F DL+++DQV LLRA E L+ + RS+ + D +LL + + + + V +I RV+ ELV+ + + MD +E CL+AIV F+P A+GL++ ++E LR +V LE Y + + GRF K+LL LP+L+SI +E + K G ID L EML Sbjct: 132 GSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECASTGHEDMPVERILEAEL-------AVEPKTESYGDMSVESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR----------SSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 456
BLAST of transcription factor hnf-4 homolog vs. SwissProt
Match: gi|167016572|sp|Q0GFF6.2|RXRG_PIG (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 243.047 bits (619), Expect = 1.334e-72 Identity = 129/344 (37.50%), Postives = 198/344 (57.56%), Query Frame = 0 Query: 193 GNVLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHGQHGY-DIQKDQLTNREIETKQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEML 535 G+++ CAICGD+++GKHYG SC+GCKGFF+R++RK Y CR ++C++ K +RN+C++CR +KC+ GMK ++VQ R R S +R+ E+E ++ + V + +AEL Y D+ + TN + +I + +QL LVEWAK IP F DL+++DQV LLRA E L+ + RS+ + D +LL + + + + V +I RV+ ELV+ + + MD +E CL+AIV F+P A+GL++ ++E LR +V LE Y + + GRF K+LL LP+L+SI +E + K G ID L EML Sbjct: 132 GSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECASSGHEDMPVERILEAELAVEPKTESYGDMNMENSTND--------PVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR----------SSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 456
BLAST of transcription factor hnf-4 homolog vs. SwissProt
Match: gi|75062013|sp|Q5REL6.1|RXRG_PONAB (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 243.047 bits (619), Expect = 1.421e-72 Identity = 129/344 (37.50%), Postives = 198/344 (57.56%), Query Frame = 0 Query: 193 GNVLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHGQHGY-DIQKDQLTNREIETKQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEML 535 G+++ CAICGD+++GKHYG SC+GCKGFF+R++RK Y CR ++C++ K +RN+C++CR +KC+ GMK ++VQ R R S +R+ E+E ++ + V + +AEL Y D+ + TN + +I + +QL LVEWAK IP F DL+++DQV LLRA E L+ + RS+ + D +LL + + + + V +I RV+ ELV+ + + MD +E CL+AIV F+P A+GL++ ++E LR +V LE Y + + GRF K+LL LP+L+SI +E + K G ID L EML Sbjct: 132 GSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECASSGHEDMPVERILEAELAVEPKTESYGDMNMENSTND--------PVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR----------SSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 456
BLAST of transcription factor hnf-4 homolog vs. SwissProt
Match: gi|1350913|sp|P48443.1|RXRG_HUMAN (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 243.047 bits (619), Expect = 1.663e-72 Identity = 129/344 (37.50%), Postives = 197/344 (57.27%), Query Frame = 0 Query: 193 GNVLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHGQHGY-DIQKDQLTNREIETKQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEML 535 G+++ CAICGD+++GKHYG SC+GCKGFF+R++RK Y CR ++C++ K +RN+C++CR +KC+ GMK ++VQ R R S +R+ E+E + + V + +AEL Y D+ + TN + +I + +QL LVEWAK IP F DL+++DQV LLRA E L+ + RS+ + D +LL + + + + V +I RV+ ELV+ + + MD +E CL+AIV F+P A+GL++ ++E LR +V LE Y + + GRF K+LL LP+L+SI +E + K G ID L EML Sbjct: 132 GSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECATSGHEDMPVERILEAELAVEPKTESYGDMNMENSTND--------PVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR----------SSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 456
BLAST of transcription factor hnf-4 homolog vs. SwissProt
Match: gi|133700|sp|P28701.1|RXRG_CHICK (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 242.276 bits (617), Expect = 2.964e-72 Identity = 129/337 (38.28%), Postives = 194/337 (57.57%), Query Frame = 0 Query: 200 CAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHGQHGY-DIQKDQLTNREIETKQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEML 535 CAICGD+++GKHYG SC+GCKGFF+R++RK Y CR ++C++ K +RN+C++CR +KC+ GMK ++VQ R + S +RS E+ES++ + V + +AEL Y D+ + TN + +I + +QL LVEWAK IP F DL+++DQV LLRA E L+ + RS+ + D +LL + + + + V +I RV+ ELV+ + + MD +E CL+AIV F+P A+GL+ ++E LR +V LE Y + + GRF K+LL LP+L+SI +E + K G ID L EML Sbjct: 143 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER-QGSRERSENEAESTSGGSEDMPVERILEAELAVEPKTEAYSDVNTESSTND--------PVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR----------SSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 460
BLAST of transcription factor hnf-4 homolog vs. nr
Match: gi|665791834|ref|XP_008543492.1| (PREDICTED: hepatocyte nuclear factor 4-gamma isoform X2 [Microplitis demolitor]) HSP 1 Score: 478.019 bits (1229), Expect = 5.515e-161 Identity = 233/360 (64.72%), Postives = 284/360 (78.89%), Query Frame = 0 Query: 195 VLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHGQHGYDIQKDQLTNREIET----KQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEMLLGGAIYPQNGNGSTP 550 VL +CAICGD+ATGKHYGAASCDGCKGFFRRSVRK Y CRF RNCVV KDKRNQCR+CRLRKC KAGMK ++VQ+ RDRIS +R + E ++SN GLSV +L +AE+LSR Q G ++ QL + ET KQ+A+I D+ DSMKQQLLILVEWAK+IPAF +L++DDQVALLRAHAGEHLLLGV RRS+HLND+LLLGN+ II K D N QD+ + +G+R+M ELV P ++ +DDTEFACLKAIVFFDP A+GL++ +I+ LRYQ+Q+NLEDYI+DRQYD+RGRFG+ILLTLP+LQSI+W MIEQI + +G+AHID+LLQEMLLGGA NG +TP Sbjct: 53 VLSQHCAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCRFNRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQTSNGG--GLSVVSLLQAEMLSR--QVGAALEVQQLGSPSNETDLSNKQIANINDVCDSMKQQLLILVEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMHLNDVLLLGNNCIITKSCPDGRN------QDLDISRVGIRIMEELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPARIKHLRYQIQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDSLLQEMLLGGASAELNG-ATTP 401
BLAST of transcription factor hnf-4 homolog vs. nr
Match: gi|1061098687|ref|XP_017876052.1| (PREDICTED: hepatocyte nuclear factor 4-gamma-like isoform X1 [Ceratina calcarata]) HSP 1 Score: 478.019 bits (1229), Expect = 5.855e-161 Identity = 236/385 (61.30%), Postives = 292/385 (75.84%), Query Frame = 0 Query: 193 GNVLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRH-------GQHGYDIQKDQLTNREIETKQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEMLLGGAIYPQNGNGSTPSSPSATSMALSNSMSLTSSL 570 G VL +CAICGD+ATGKHYGAASCDGCKGFFRRSVRK Y CRF RNCVV KDKRNQCR+CRLRKC KAGMK ++VQ+ RDRIS +R + E +SSN S GLSV +L +AE+LSR G G DI ++ TKQ+A+I D+ DSMKQQLLILVEWAK+IPAF +L++DDQVALLRAHAGEHLLLGV RRS+ L D+LLLGN+ II K+ QD+ + +G+RVM+ELV P ++ +DDTEFACLKAIVFFDP A+GL++ +I++LRYQ+Q+NLEDYI+DRQYD+RGRFG+ILLTLP+LQSI+W MIEQI + +G+AHIDNLLQEMLLGGA NG + + +A +S++ S +S L Sbjct: 51 GGVLSQHCAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQSSNGS--GLSVVSLLQAEMLSRQVGAALELGSPGGDI--------DLTTKQIANINDVCDSMKQQLLILVEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLKDVLLLGNNCIITKNCPVISLSSEGRNQDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQIQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDNLLQEMLLGGATAEINGAVTPIQNSNAPGSYVSSNESPSSPL 425
BLAST of transcription factor hnf-4 homolog vs. nr
Match: gi|665791838|ref|XP_008543494.1| (PREDICTED: transcription factor HNF-4 homolog isoform X4 [Microplitis demolitor]) HSP 1 Score: 477.248 bits (1227), Expect = 6.606e-161 Identity = 232/360 (64.44%), Postives = 283/360 (78.61%), Query Frame = 0 Query: 195 VLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHGQHGYDIQKDQLTNREIET----KQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEMLLGGAIYPQNGNGSTP 550 VL +CAICGD+ATGKHYGAASCDGCKGFFRRSVRK Y CRF RNCVV KDKRNQCR+CRLRKC KAGMK ++VQ+ RDRIS +R + E ++SN GLSV +L +AE+LSR Q G ++ QL + ET KQ+A+I D+ DSMKQQLLILVEWAK+IPAF +L++DDQVALLRAHAGEHLLLGV RRS+HLND+LLLGN+ II K P QD+ + +G+R+M ELV P ++ +DDTEFACLKAIVFFDP A+GL++ +I+ LRYQ+Q+NLEDYI+DRQYD+RGRFG+ILLTLP+LQSI+W MIEQI + +G+AHID+LLQEMLLGGA NG +TP Sbjct: 30 VLSQHCAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCRFNRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQTSNGG--GLSVVSLLQAEMLSR--QVGAALEVQQLGSPSNETDLSNKQIANINDVCDSMKQQLLILVEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMHLNDVLLLGNNCIITKSCPVISLPTDGRNQDLDISRVGIRIMEELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPARIKHLRYQIQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDSLLQEMLLGGASAELNG-ATTP 384
BLAST of transcription factor hnf-4 homolog vs. nr
Match: gi|665791830|ref|XP_008543490.1| (PREDICTED: hepatocyte nuclear factor 4-gamma isoform X1 [Microplitis demolitor] >gi|665791832|ref|XP_008543491.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform X1 [Microplitis demolitor]) HSP 1 Score: 477.633 bits (1228), Expect = 7.959e-161 Identity = 232/360 (64.44%), Postives = 283/360 (78.61%), Query Frame = 0 Query: 195 VLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHGQHGYDIQKDQLTNREIET----KQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEMLLGGAIYPQNGNGSTP 550 VL +CAICGD+ATGKHYGAASCDGCKGFFRRSVRK Y CRF RNCVV KDKRNQCR+CRLRKC KAGMK ++VQ+ RDRIS +R + E ++SN GLSV +L +AE+LSR Q G ++ QL + ET KQ+A+I D+ DSMKQQLLILVEWAK+IPAF +L++DDQVALLRAHAGEHLLLGV RRS+HLND+LLLGN+ II K P QD+ + +G+R+M ELV P ++ +DDTEFACLKAIVFFDP A+GL++ +I+ LRYQ+Q+NLEDYI+DRQYD+RGRFG+ILLTLP+LQSI+W MIEQI + +G+AHID+LLQEMLLGGA NG +TP Sbjct: 53 VLSQHCAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCRFNRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQTSNGG--GLSVVSLLQAEMLSR--QVGAALEVQQLGSPSNETDLSNKQIANINDVCDSMKQQLLILVEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMHLNDVLLLGNNCIITKSCPVISLPTDGRNQDLDISRVGIRIMEELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPARIKHLRYQIQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDSLLQEMLLGGASAELNG-ATTP 407
BLAST of transcription factor hnf-4 homolog vs. nr
Match: gi|1031995998|ref|XP_016772953.1| (PREDICTED: transcription factor HNF-4 homolog, partial [Apis mellifera]) HSP 1 Score: 475.322 bits (1222), Expect = 1.138e-160 Identity = 236/401 (58.85%), Postives = 302/401 (75.31%), Query Frame = 0 Query: 186 THSPEANGNVLPMNCAICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRNQCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTTLEKAELLSRHG---QHGYDIQKDQLTNREIETKQLASIADIGDSMKQQLLILVEWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDMIIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACLKAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILLTLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEMLLGGAIYPQNGNGSTPSSPSATSMALSNSMSLTSSLMNLDTSSTYNPPL 583 T S G VL +CAICGD+ATGKHYGAASCDGCKGFFRRSVRKK Y CRF RNC++ KDKRNQCR+CRLRKC KAGMK ++VQ+ RDRIS +R + E +S+N S GLSV +L +AE+LSR + G +I ++ TKQ+A+I D+ DSMK+QLL+LV+WAK+IPAF +L++DDQVALLRAHAGEHLLLGV RRS+ L D+LLLGN+ II K+ + N QD+ + +G+RVM+ELV P ++ +DDTEFACLKAIVFFDP A+GL++ +I++LRYQ+Q+NLEDYI+DRQYD+RGRFG+ILLTLP+LQSI+W MIEQI + +G+AHIDNLLQEMLLGGA NG + +A+ +S++ S +S L + T PPL Sbjct: 21 TLSGSGVGGVLSQHCAICGDRATGKHYGAASCDGCKGFFRRSVRKKHEYTCRFSRNCIIDKDKRNQCRYCRLRKCFKAGMKMEAVQNERDRISCRRPSYEEQSNNGS--GLSVVSLLQAEMLSRQVASLELGSEI--------DLSTKQIANINDVCDSMKEQLLVLVQWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLQDVLLLGNNCIITKNCPEGRN------QDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQIQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDNLLQEMLLGGATAEINGVATPVPISNASGSYVSSNESPSSPL-----TPTNVPPL 400 The following BLAST results are available for this feature:
BLAST of transcription factor hnf-4 homolog vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
Pagesback to top
BLAST of transcription factor hnf-4 homolog vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of transcription factor hnf-4 homolog vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1013_size70870:5764..14669- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1013_size70870-snap-gene-0.16 ID=maker-scaffold1013_size70870-snap-gene-0.16|Name=transcription factor hnf-4 homolog|organism=Tigriopus kingsejongensis|type=gene|length=8906bp|location=Sequence derived from alignment at scaffold1013_size70870:5764..14669- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'transcription factor hnf-4 homolog' has the following synonyms
Add to Basket
|