ccr4-not transcription complex subunit 2, maker-scaffold1034_size68570-snap-gene-0.16 (gene) Tigriopus kingsejongensis

Overview


Name	ccr4-not transcription complex subunit 2
Unique Name	maker-scaffold1034_size68570-snap-gene-0.16
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of ccr4-not transcription complex subunit 2 vs. L. salmonis genes
Match: EMLSAG00000006470 (supercontig:LSalAtl2s:LSalAtl2s353:368293:371632:1 gene:EMLSAG00000006470 transcript:EMLSAT00000006470 description:"maker-LSalAtl2s353-augustus-gene-2.44")

HSP 1 Score: 109.383 bits (272), Expect = 1.002e-27
Identity = 70/190 (36.84%), Postives = 104/190 (54.74%), Query Frame = 0

Query:  102 DQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVI----RFHGPRLLPHFESPFSSKLNTLYLDYD-VPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            D +GLRGL   I+++ ++ + P        +++++  DLG+S+  +    R   P     F++PFS+ +  +  DY  VP EY  +  L   L    SHY PT+LLFFLFYTAVG++LQL A   LF+RGWRF K    W+ R P    E  S   + G YQYFDV S  +K+       ++ + ++ LP
Sbjct:  102 DDYGLRGLEMLIEESRKSLLSPW-------SSIITPADLGYSNYSLSRSRRLESPY---RFKTPFSNNVLGVLNDYYYVPKEYLHSSILYDQLPLPGSHYWPTDLLFFLFYTAVGEVLQLIAGYNLFDRGWRFNKLTRTWIXRIPQVPLEERSYEFERGTYQYFDVSSGSKKTAKLTLYYKEFSDRIGLP 281

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BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|46396017|sp|Q9NZN8.1|CNOT2_HUMAN (RecName: Full=CCR4-NOT transcription complex subunit 2; AltName: Full=CCR4-associated factor 2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.098e-21
Identity = 70/237 (29.54%), Postives = 107/237 (45.15%), Query Frame = 0

Query:   54 NNNNAFVSKYPPPPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            N +    S    P +PG   +T       + G    P G     P  + +DQFG+ GL   I+        P M H    + + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  +  LP
Sbjct:  303 NTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 528

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BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|46395846|sp|Q8C5L3.2|CNOT2_MOUSE (RecName: Full=CCR4-NOT transcription complex subunit 2; AltName: Full=CCR4-associated factor 2)

HSP 1 Score: 97.0561 bits (240), Expect = 4.557e-21
Identity = 68/225 (30.22%), Postives = 104/225 (46.22%), Query Frame = 0

Query:   66 PPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            P +PG   +T       + G    P G     P  + +DQFG+ GL   I+        P M H    + + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  +  LP
Sbjct:  315 PKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 528

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BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|47117030|sp|Q94547.2|RGA_DROME (RecName: Full=Regulator of gene activity; Short=Protein regena; AltName: Full=CCR4-NOT transcription complex subunit 2 homolog; Short=CNOT2; Short=Not2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-19
Identity = 59/193 (30.57%), Postives = 91/193 (47.15%), Query Frame = 0

Query:   88 PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPRLLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDL 279
            P G     P  + ++QFG+ GL         T IR         T  +  +  G    +       L   F  PF ++      ++++VP EY   + +   L       L  +LLFFLFYT +GD++QL AAA+L  R WR++ E  +W++R P      ++ T++ G + YFD QSW+R S  F+   E L
Sbjct:  388 PDGKVTNIPATMVNNQFGMVGLL--------TFIRAAETDPNLVTLSLGTDLTGLGLNLNSQE--SLHTTFAGPFVAQPCRAQDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYYFDAQSWKRLSKVFQIDPEKL 570

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BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|384872610|sp|P87240.2|NOT2_SCHPO (RecName: Full=General negative regulator of transcription subunit 2)

HSP 1 Score: 59.3066 bits (142), Expect = 8.175e-9
Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 0

Query:  200 ELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQ 284
            E LF++FYT   D++Q  AA +L  R WRF+KE  VWL+  P  +P   +   + G Y +FD   W+R    F      L  + Q
Sbjct:  217 ETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKDFLLMYAALEDRAQ 301

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BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|75268416|sp|Q52JK6.1|VIP2_NICBE (RecName: Full=Probable NOT transcription complex subunit VIP2; AltName: Full=Protein VIRE2 INTERACTING PROTEIN2; Short=NbVIP2)

HSP 1 Score: 55.4546 bits (132), Expect = 3.104e-7
Identity = 29/89 (32.58%), Postives = 46/89 (51.69%), Query Frame = 0

Query:  200 ELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWER-KSGSFKFKLEDLATKVQLPR 287
            + LF++FY+   D  QL AA +L+ RGW +++E  +W  R  N  P  ++   + G Y  FD  +WE     +F    E L  +  LP+
Sbjct:  514 DTLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEKRPVLPQ 602

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BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|907619313|ref|XP_013119561.1| (PREDICTED: regulator of gene activity isoform X1 [Stomoxys calcitrans] >gi|907619321|ref|XP_013119564.1| PREDICTED: regulator of gene activity isoform X1 [Stomoxys calcitrans] >gi|907619325|ref|XP_013119565.1| PREDICTED: regulator of gene activity isoform X1 [Stomoxys calcitrans] >gi|907619329|ref|XP_013119566.1| PREDICTED: regulator of gene activity isoform X1 [Stomoxys calcitrans])

HSP 1 Score: 99.3673 bits (246), Expect = 3.293e-19
Identity = 66/194 (34.02%), Postives = 97/194 (50.00%), Query Frame = 0

Query:   88 PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPRLLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYE-SMTEQFGEYQYFDVQSWERKSGSFKFKLEDL 279
            P G     P  + ++QFG+ GL         T +R   + +P   T+ S  DL      +      L P F  PF+        ++Y+VP EY   + +   L       L  +LLFFLFYT +GDI+QL AAA+L  R WR++ E  +W++R P    +YE + T++ G + YFD QSW+R S  F+   E L
Sbjct:  395 PDGKVTNIPASMVNNQFGMVGLL--------TFMRAAES-DPNLVTLASGIDLTGLGLNLNSQ-ESLHPTFAGPFADHPCRAQDVEYNVPPEYLINFAIRDKLSSPHLKKLQEDLLFFLFYTNIGDIMQLMAAAELHSREWRYHIEEKIWITRIPGLNHQYEKNGTKERGTFYYFDAQSWKRLSKVFQIDPEKL 578

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BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|163915285|ref|NP_001106600.1| (CCR4-NOT transcription complex subunit 2 [Xenopus tropicalis] >gi|847108360|ref|XP_012813966.1| PREDICTED: CCR4-NOT transcription complex subunit 2 isoform X1 [Xenopus tropicalis] >gi|160774118|gb|AAI55434.1| LOC100127821 protein [Xenopus tropicalis])

HSP 1 Score: 98.9821 bits (245), Expect = 3.337e-19
Identity = 64/201 (31.84%), Postives = 96/201 (47.76%), Query Frame = 0

Query:   88 PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            P G     P  + +DQFG+ GL   I+        P M H      + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  + QLP
Sbjct:  321 PDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGNDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPQLP 510

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BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|1160103726|ref|XP_020392310.1| (CCR4-NOT transcription complex subunit 2 isoform X1 [Rhincodon typus] >gi|1160103728|ref|XP_020392313.1| CCR4-NOT transcription complex subunit 2 isoform X1 [Rhincodon typus])

HSP 1 Score: 98.9821 bits (245), Expect = 3.371e-19
Identity = 70/231 (30.30%), Postives = 107/231 (46.32%), Query Frame = 0

Query:   60 VSKYPPPPYPGVDVTTLPPPLPPQSGYGPI--GSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            VS    P +PG   +T       + G   +  G     PT + +DQFG+ GL   I+        P M H    + + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  +  LP
Sbjct:  312 VSSTDGPKFPGDKSSTTQNNNLQKKGIQVLSDGRVTNIPTGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTVKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 531

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BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|668451845|gb|KFB40871.1| (AGAP003525-PA-like protein [Anopheles sinensis])

HSP 1 Score: 99.3673 bits (246), Expect = 3.416e-19
Identity = 61/193 (31.61%), Postives = 88/193 (45.60%), Query Frame = 0

Query:   88 PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPRLLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDL 279
            P GS    P  + ++QFG+ GL         T +R         T  M ++ +     +       L P F  PF+        +DY+VP EY     +   L          +LLF+LFYT VGD++QL AAA+L  R WR++ E  VW++R P   P  ++ T + G Y YFD Q+W R    F+     L
Sbjct:  433 PSGSVTNIPASMVNNQFGMVGLL--------TFLRAAETDPNLVTLAMGQDLMALGLNLTAVE--NLYPSFGGPFADAPARPQDIDYNVPPEYLINMSIRDKLSKLTLQKYKDDLLFYLFYTNVGDMMQLAAAAELHSRDWRYHTEEKVWITRVPGMTPYEKNGTTERGTYYYFDAQTWRRVPKEFQVDTVKL 615

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BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|148689853|gb|EDL21800.1| (CCR4-NOT transcription complex, subunit 2, isoform CRA_j [Mus musculus] >gi|149066930|gb|EDM16663.1| rCG48666, isoform CRA_f [Rattus norvegicus])

HSP 1 Score: 95.9005 bits (237), Expect = 3.461e-19
Identity = 68/225 (30.22%), Postives = 104/225 (46.22%), Query Frame = 0

Query:   66 PPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            P +PG   +T       + G    P G     P  + +DQFG+ GL   I+        P M H    + + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  +  LP
Sbjct:   55 PKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 268

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BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|1069337482|ref|XP_018107955.1| (PREDICTED: CCR4-NOT transcription complex subunit 2-like isoform X2 [Xenopus laevis])

HSP 1 Score: 98.9821 bits (245), Expect = 3.617e-19
Identity = 69/225 (30.67%), Postives = 104/225 (46.22%), Query Frame = 0

Query:   66 PPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            P +PG   +T       + G    P G     P  + +DQFG+ GL   I+        P M H      + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  + QLP
Sbjct:  323 PKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGNDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPQLP 536

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BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|11640600|gb|AAG39297.1|AF113226_1 (MSTP046 [Homo sapiens])

HSP 1 Score: 97.4413 bits (241), Expect = 3.691e-19
Identity = 70/237 (29.54%), Postives = 107/237 (45.15%), Query Frame = 0

Query:   54 NNNNAFVSKYPPPPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            N +    S    P +PG   +T       + G    P G     P  + +DQFG+ GL   I+        P M H    + + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  +  LP
Sbjct:  128 NTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 353

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BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|7020899|dbj|BAA91313.1| (unnamed protein product [Homo sapiens])

HSP 1 Score: 98.5969 bits (244), Expect = 3.859e-19
Identity = 84/283 (29.68%), Postives = 123/283 (43.46%), Query Frame = 0

Query:   10 TLGCSNLNPLSKPFAPRLSGSS--EPTSPTGGMTGAGGPPFFLNLNNNNNAFVSKYPPPPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            T G  N+  L     P L GSS  +PTS               NLN +     S    P +PG   +T       + G    P G     P  + +DQFG+ GL   I+        P M H    + + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  +  LP
Sbjct:  216 TDGSENVTGLDLSDFPALPGSSYKDPTSSNDDSKS--------NLNTSGKT-TSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 478

[Close]

BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|632970973|ref|XP_007901943.1| (PREDICTED: CCR4-NOT transcription complex subunit 2 isoform X2 [Callorhinchus milii])

HSP 1 Score: 98.5969 bits (244), Expect = 4.509e-19
Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 0

Query:   90 GSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            G     PT + +DQFG+ GL   I+        P M H    + + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  +  LP
Sbjct:  331 GRVTNIPTGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPSMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 518

[Close]

BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|1317840756|ref|NP_001346182.1| (CCR4-NOT transcription complex subunit 2 isoform f [Mus musculus] >gi|568968696|ref|XP_006514253.1| PREDICTED: CCR4-NOT transcription complex subunit 2 isoform X10 [Mus musculus] >gi|568968698|ref|XP_006514254.1| PREDICTED: CCR4-NOT transcription complex subunit 2 isoform X10 [Mus musculus] >gi|1039734289|ref|XP_017169601.1| PREDICTED: CCR4-NOT transcription complex subunit 2 isoform X10 [Mus musculus] >gi|149066924|gb|EDM16657.1| rCG48666, isoform CRA_b [Rattus norvegicus])

HSP 1 Score: 97.0561 bits (240), Expect = 4.624e-19
Identity = 68/225 (30.22%), Postives = 104/225 (46.22%), Query Frame = 0

Query:   66 PPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286
            P +PG   +T       + G    P G     P  + +DQFG+ GL   I+        P M H    + + +   LG     +  + P  L P F SP++S       +D+ VP EY T   +   L          +LLF+L+Y   GD+LQL AA +LF R WR++KE  VW++R P   P  ++ T + G Y +FD  +W + +  F  + + L  +  LP
Sbjct:  125 PKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 338

The following BLAST results are available for this feature:

BLAST of ccr4-not transcription complex subunit 2 vs. L. salmonis genes
BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
BLAST of ccr4-not transcription complex subunit 2 vs. nr

BLAST of ccr4-not transcription complex subunit 2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAG00000006470	1.002e-27	36.84	supercontig:LSalAtl2s:LSalAtl2s353:368293:371632:1...	[more]

BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|46396017\|sp\|Q9NZN8.1\|CNOT2_HUMAN	3.098e-21	29.54	RecName: Full=CCR4-NOT transcription complex subun...	[more]
gi\|46395846\|sp\|Q8C5L3.2\|CNOT2_MOUSE	4.557e-21	30.22	RecName: Full=CCR4-NOT transcription complex subun...	[more]
gi\|47117030\|sp\|Q94547.2\|RGA_DROME	1.477e-19	30.57	RecName: Full=Regulator of gene activity; Short=Pr...	[more]
gi\|384872610\|sp\|P87240.2\|NOT2_SCHPO	8.175e-9	36.47	RecName: Full=General negative regulator of transc...	[more]
gi\|75268416\|sp\|Q52JK6.1\|VIP2_NICBE	3.104e-7	32.58	RecName: Full=Probable NOT transcription complex s...	[more]

BLAST of ccr4-not transcription complex subunit 2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|907619313\|ref\|XP_013119561.1\|	3.293e-19	34.02	PREDICTED: regulator of gene activity isoform X1 [...	[more]
gi\|163915285\|ref\|NP_001106600.1\|	3.337e-19	31.84	CCR4-NOT transcription complex subunit 2 [Xenopus ...	[more]
gi\|1160103726\|ref\|XP_020392310.1\|	3.371e-19	30.30	CCR4-NOT transcription complex subunit 2 isoform X...	[more]
gi\|668451845\|gb\|KFB40871.1\|	3.416e-19	31.61	AGAP003525-PA-like protein [Anopheles sinensis]	[more]
gi\|148689853\|gb\|EDL21800.1\|	3.461e-19	30.22	CCR4-NOT transcription complex, subunit 2, isoform...	[more]
gi\|1069337482\|ref\|XP_018107955.1\|	3.617e-19	30.67	PREDICTED: CCR4-NOT transcription complex subunit ...	[more]
gi\|11640600\|gb\|AAG39297.1\|AF113226_1	3.691e-19	29.54	MSTP046 [Homo sapiens]	[more]
gi\|7020899\|dbj\|BAA91313.1\|	3.859e-19	29.68	unnamed protein product [Homo sapiens]	[more]
gi\|632970973\|ref\|XP_007901943.1\|	4.509e-19	31.66	PREDICTED: CCR4-NOT transcription complex subunit ...	[more]
gi\|1317840756\|ref\|NP_001346182.1\|	4.624e-19	30.22	CCR4-NOT transcription complex subunit 2 isoform f...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1034_size68570	supercontig	scaffold1034_size68570:35479..38153 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold1034_size68570-snap-gene-0.16-mRNA-1	maker-scaffold1034_size68570-snap-gene-0.16-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold1034_size68570:35479..38153-

gene from alignment at scaffold1034_size68570:35479..38153-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold1034_size68570-snap-gene-0.16 ID=maker-scaffold1034_size68570-snap-gene-0.16|Name=ccr4-not transcription complex subunit 2|organism=Tigriopus kingsejongensis|type=gene|length=2675bp|location=Sequence derived from alignment at scaffold1034_size68570:35479..38153- (Tigriopus kingsejongensis)
CGGATCGTTCGACCAGTTTGAAGGAAACTGCTCTTTGCCGATCCTCTGAC
TCTGTATACTTTCGACATCGATGCTTGAACACTAAATTGGCCAGTCCAAG
ATTCCAGCGACTAACTCGGCTTGACCATGCTCCACCTCGTCCCGCCCACC
TTAGGCTGCTCCAACCTCAATCCCCTGAGCAAGCCCTTCGCGCCCCGCCT
CAGTGGCTCGAGCGAGCCCACCTCGCCCACGGGGGGCATGACTGGGGCGG
GGGGACCGCCTTTCTTCTTGAATCTGAACAATAACAACAACGCCTTCGTG
AGCAAGTACCCGCCCCCACCCTACCCTGGCGTGGACGTAACCACCCTGCC
TCCGCCTCTCCCCCCTCAGTCTGGATATGGACCCATTGGATCGCCTTGCG
AAAAGCCCACGGTCCTGAGGTACCCCCAATGCGATGGTGGGGGCCGGAAC
TTTACGTTTCCCCAACAGTTTAATCCGTTAAAACTGTTTAAAGTTTAATC
CGGAGGCTTGATGCCTGGCACGGGAGTCTTGGGAAATTTAAAGCTAATCC
AGTCCAGCATGGTGACCCCGTAATCCATGGAGTACTAAAATTCTAGCACT
CCATGCCGGAGATGCAAGGGACAATCTCAATCACGGGACATGACAGCTTT
TATCCCTTTTAGTTACTCAACTTGTGAGATTTAAGCTAGTTATCATTATT
TAATCGTCGTTGGCTCCACTTTTTCTTGATGCATTCAAGACACGTGTTTT
TTGTACCACCTGAAGCAATGCTGCAAATTTTGTATCGAAGAGCATCATTG
AAACTCGGATGGTCGGATTTCATAGGCAACACGAATTCAAACGGGCCAAA
CCCAACTTGTCCAAAGGAAAAGGTATAATCCAAACTTGCCCACTGAGCCA
ATCACAGGCCAAATCGAGGATCTAGGAAGGGGTTGAGTCTAATGCGAGAG
TGTTAATGAATTTGACATACTCAAGAAAATGAAGAGACCTCGGTAGCACC
GAGTTTAGATTGGCCTGTCTTGAAGAGCGGACCTGAGAGATGGGCCTATG
AAACGTCGAGAAAGACGCTCTATTTGAAGCTCGAATGCCCACTGGCCAAA
CTCTGCCGTCATACTTCTTGGCGGGTTAATCCTCACTTGTCACCCATTCT
TTCCGACGTGTCTCCCTTGGGGTGTTTCAGGTCGGACCAGTTCGGTCTGC
GCGGTCTGTGGCGCAACATCCAAGACACGCATCGAACCCGCATCCGTCCG
CGCATGGCCCACGAGCCCTTCGAGACGACTGTGATGAGCCGAGAGGACTT
GGGCTTTTCGGACGAGGTGATCCGATTCCACGGGCCTCGGCTCTTGCCGC
ACTTTGAATCACCCTTCAGCTCCAAGCTGAACACGCTCTACTTGGACTAC
GACGTGCCCGACGAGTATCGCACGGCCTGGAAGCTCTCGGGCTGCCTGAA
AGGCAAGTGGTCCCACTATCTGCCCACGGAGCTCCTGTTCTTCTTGTTCT
ACACGGCCGTGGGTGATATTCTCCAACTTGAGGCCGCGGCCAAGCTTTTC
GAGCGTGGCTGGAGATTCTACAAGGTAAAACCTCGCTAATCTGGTGGGAG
CTTGAGGGTATCACCCCTCGTGGGAGGTGTCTACCTATCTATTATGAGTA
ATGCCCAATTGTATGTCAGGAATCGAATGACATGGATACAACACCTTCCG
TGTAATATCTTGCCAATAGAGCGAGCTAAAACAGTAGAATAGTTCTGCCT
CCTCTCTAAACATGTAGAAGCAAGGTATGCTTCCGATTCGAGCAGTCTGA
GGAGCACTGAATCGCCGATCAATACGTTCCTGACACTGAGGAATTGAAGC
TCTTGAAGCCTTCTGTTGATCTCATTTTGGCCATGGCACATCGTCATGGG
ATCACATGTGTTCGGGAAGGTAACGCGGGTTTATGCAACATTTACCCAAT
GTCAACGCGATAACTCTGGGCCCATTGTGCGGAGGCACCTGTGAGACTTC
ACTTGAAAGGATCGTTCATAACTGTGTGCGTTATCCATTCCCAGGAGAGA
GGCGTCTGGCTATCGCGCAAGCCCAATTGCCGTCCCGAATACGAGAGCAT
GACCGAGCAATTTGGCGAGTACCAGTACTTCGACGTCCAATCCTGGGAGC
GCAAGTCGGGCAGCTTCAAGTTCAAGCTCGAGGACCTGGCCACCAAGGTC
CAGCTGCCTCGGGGCCCCTTTCCCATGGCCAACGGGTTCAACGTGTACCC
GCCTCAGCCCCCCAAGCCGGTGGGCTGGCCGCCGCGTCGCGAAATGGGCA
AGTCTGCGGCCCCGTGGCACCACGGGTTCGTGCCCCCCTACAACGCCTAC
TACTCCACGGTGGTCTGAGGGGCTGGGCGGGCAGAATTTTAAGATGAAGT
ATCAAACTGGGCTCAGGTTGATAGCCACGTGTGACTGAACCACTAGCATA
AATGTCGAATCAGGGCGACCCTTGACATCCCCACGATTATAAACCAATCA
AGAATCTCCTTCCCTCTTCGTCAATTTCTATGAAGAACACCCTTTGGACA
AGATCAAAACTTTCTCAACTACGTGTCTACTATTGCCTTCATCCATTGTT
TTTATGTTACGTCTTTCATATTCTCTCTATCATTGTATGATGATTGAATC
AGATTATGATAAATATATGTACTAA

Synonyms

The feature 'ccr4-not transcription complex subunit 2' has the following synonyms


Synonym
Tk10485

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