ccr4-not transcription complex subunit 2, maker-scaffold1034_size68570-snap-gene-0.16 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of ccr4-not transcription complex subunit 2 vs. L. salmonis genes
Match: EMLSAG00000006470 (supercontig:LSalAtl2s:LSalAtl2s353:368293:371632:1 gene:EMLSAG00000006470 transcript:EMLSAT00000006470 description:"maker-LSalAtl2s353-augustus-gene-2.44") HSP 1 Score: 109.383 bits (272), Expect = 1.002e-27 Identity = 70/190 (36.84%), Postives = 104/190 (54.74%), Query Frame = 0 Query: 102 DQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVI----RFHGPRLLPHFESPFSSKLNTLYLDYD-VPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286 D +GLRGL I+++ ++ + P +++++ DLG+S+ + R P F++PFS+ + + DY VP EY + L L SHY PT+LLFFLFYTAVG++LQL A LF+RGWRF K W+ R P E S + G YQYFDV S +K+ ++ + ++ LP Sbjct: 102 DDYGLRGLEMLIEESRKSLLSPW-------SSIITPADLGYSNYSLSRSRRLESPY---RFKTPFSNNVLGVLNDYYYVPKEYLHSSILYDQLPLPGSHYWPTDLLFFLFYTAVGEVLQLIAGYNLFDRGWRFNKLTRTWIXRIPQVPLEERSYEFERGTYQYFDVSSGSKKTAKLTLYYKEFSDRIGLP 281
BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|46396017|sp|Q9NZN8.1|CNOT2_HUMAN (RecName: Full=CCR4-NOT transcription complex subunit 2; AltName: Full=CCR4-associated factor 2) HSP 1 Score: 97.8265 bits (242), Expect = 3.098e-21 Identity = 70/237 (29.54%), Postives = 107/237 (45.15%), Query Frame = 0 Query: 54 NNNNAFVSKYPPPPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286 N + S P +PG +T + G P G P + +DQFG+ GL I+ P M H + + + LG + + P L P F SP++S +D+ VP EY T + L +LLF+L+Y GD+LQL AA +LF R WR++KE VW++R P P ++ T + G Y +FD +W + + F + + L + LP Sbjct: 303 NTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 528
BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|46395846|sp|Q8C5L3.2|CNOT2_MOUSE (RecName: Full=CCR4-NOT transcription complex subunit 2; AltName: Full=CCR4-associated factor 2) HSP 1 Score: 97.0561 bits (240), Expect = 4.557e-21 Identity = 68/225 (30.22%), Postives = 104/225 (46.22%), Query Frame = 0 Query: 66 PPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286 P +PG +T + G P G P + +DQFG+ GL I+ P M H + + + LG + + P L P F SP++S +D+ VP EY T + L +LLF+L+Y GD+LQL AA +LF R WR++KE VW++R P P ++ T + G Y +FD +W + + F + + L + LP Sbjct: 315 PKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 528
BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|47117030|sp|Q94547.2|RGA_DROME (RecName: Full=Regulator of gene activity; Short=Protein regena; AltName: Full=CCR4-NOT transcription complex subunit 2 homolog; Short=CNOT2; Short=Not2) HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-19 Identity = 59/193 (30.57%), Postives = 91/193 (47.15%), Query Frame = 0 Query: 88 PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPRLLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDL 279 P G P + ++QFG+ GL T IR T + + G + L F PF ++ ++++VP EY + + L L +LLFFLFYT +GD++QL AAA+L R WR++ E +W++R P ++ T++ G + YFD QSW+R S F+ E L Sbjct: 388 PDGKVTNIPATMVNNQFGMVGLL--------TFIRAAETDPNLVTLSLGTDLTGLGLNLNSQE--SLHTTFAGPFVAQPCRAQDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYYFDAQSWKRLSKVFQIDPEKL 570
BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|384872610|sp|P87240.2|NOT2_SCHPO (RecName: Full=General negative regulator of transcription subunit 2) HSP 1 Score: 59.3066 bits (142), Expect = 8.175e-9 Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 0 Query: 200 ELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQ 284 E LF++FYT D++Q AA +L R WRF+KE VWL+ P +P + + G Y +FD W+R F L + Q Sbjct: 217 ETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKDFLLMYAALEDRAQ 301
BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Match: gi|75268416|sp|Q52JK6.1|VIP2_NICBE (RecName: Full=Probable NOT transcription complex subunit VIP2; AltName: Full=Protein VIRE2 INTERACTING PROTEIN2; Short=NbVIP2) HSP 1 Score: 55.4546 bits (132), Expect = 3.104e-7 Identity = 29/89 (32.58%), Postives = 46/89 (51.69%), Query Frame = 0 Query: 200 ELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWER-KSGSFKFKLEDLATKVQLPR 287 + LF++FY+ D QL AA +L+ RGW +++E +W R N P ++ + G Y FD +WE +F E L + LP+ Sbjct: 514 DTLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEKRPVLPQ 602
BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|958757371|ref|XP_014714048.1| (PREDICTED: CCR4-NOT transcription complex subunit 2 isoform X2 [Equus asinus]) HSP 1 Score: 98.5969 bits (244), Expect = 4.649e-19 Identity = 74/253 (29.25%), Postives = 112/253 (44.27%), Query Frame = 0 Query: 54 NNNNAFVSKYPPPPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLPRGPFPMANGFNVYPPQ 302 N + S P +PG +T + G P G P + +DQFG+ GL I+ P M H + + + LG + + P L P F SP++S +D+ VP EY T + L +LLF+L+Y GD+LQL AA +LF R WR++KE VW++R P P ++ T + G Y +FD +W + + F + + L + LP + FN P Q Sbjct: 303 NTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP-------SAFNYNPAQ 537
BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|149066927|gb|EDM16660.1| (rCG48666, isoform CRA_d [Rattus norvegicus]) HSP 1 Score: 97.4413 bits (241), Expect = 4.672e-19 Identity = 68/225 (30.22%), Postives = 104/225 (46.22%), Query Frame = 0 Query: 66 PPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLP 286 P +PG +T + G P G P + +DQFG+ GL I+ P M H + + + LG + + P L P F SP++S +D+ VP EY T + L +LLF+L+Y GD+LQL AA +LF R WR++KE VW++R P P ++ T + G Y +FD +W + + F + + L + LP Sbjct: 169 PKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP 382
BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|664741653|ref|XP_008528132.1| (PREDICTED: CCR4-NOT transcription complex subunit 2 isoform X3 [Equus przewalskii] >gi|1333687697|ref|XP_005613929.2| CCR4-NOT transcription complex subunit 2 isoform X2 [Equus caballus]) HSP 1 Score: 98.5969 bits (244), Expect = 4.726e-19 Identity = 74/253 (29.25%), Postives = 112/253 (44.27%), Query Frame = 0 Query: 54 NNNNAFVSKYPPPPYPGVDVTTLPPPLPPQSGYG--PIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPR-LLPHFESPFSSK-LNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLPRGPFPMANGFNVYPPQ 302 N + S P +PG +T + G P G P + +DQFG+ GL I+ P M H + + + LG + + P L P F SP++S +D+ VP EY T + L +LLF+L+Y GD+LQL AA +LF R WR++KE VW++R P P ++ T + G Y +FD +W + + F + + L + LP + FN P Q Sbjct: 299 NTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR---AAETDPGMVHLALGSDLTT---LG-----LNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLP-------SAFNYNPAQ 533
BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|871228743|ref|XP_005097158.2| (PREDICTED: CCR4-NOT transcription complex subunit 2-like [Aplysia californica]) HSP 1 Score: 98.2117 bits (243), Expect = 4.865e-19 Identity = 65/208 (31.25%), Postives = 97/208 (46.63%), Query Frame = 0 Query: 88 PIGSPCEKPTVLRSDQFGLRGLWRNI----QDTHRTRIRPRMAHEPFETTVMSREDLGFSDEVIRFHGPRLLPHFESPFS-SKLNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFKFKLEDLATKVQLPRGPF 290 P G+ P+ + DQFG+ GL I QD + + P + + S E+L F+SPF+ S +DY VP EY T + L + +LLF+LFY GD+LQL AAA+L+ R WR++KE VWL+R P ++ T + G Y +FD +W R + F + + L + +P F Sbjct: 254 PDGTISNIPSGMVMDQFGIVGLLSFIRAAEQDANMVALAPGIDLTTLGLNLNSPENL--------------YSMFQSPFAESACRPQDIDYHVPAEYLTNMFIRDKLAPIKLNRYSEDLLFYLFYMNGGDVLQLAAAAELYSRDWRYHKEERVWLTRAPQYEVFGKTSTSERGTYIFFDANNWRRNAKEFHLEYDKLEERPVIPSYSF 447
BLAST of ccr4-not transcription complex subunit 2 vs. nr
Match: gi|1121153499|ref|XP_019563598.1| (PREDICTED: regulator of gene activity-like isoform X3 [Aedes albopictus]) HSP 1 Score: 97.8265 bits (242), Expect = 4.962e-19 Identity = 64/192 (33.33%), Postives = 91/192 (47.40%), Query Frame = 0 Query: 85 GYGPIGSPCEKPTVLRSDQFGLRGLWRNIQDTHRTRIRPRMAHEPFETTVMSRE--DLGFSDEVIRFHGPRLLPHFESPFS-SKLNTLYLDYDVPDEYRTAWKLSGCLKGKWSHYLPTELLFFLFYTAVGDILQLEAAAKLFERGWRFYKERGVWLSRKPNCRPEYESMTEQFGEYQYFDVQSWERKSGSFK 273 G P G P + ++QFG+ GL T IR + T M ++ LG + I L P F PF+ S +DY+VP EY + L +LLF+LFYT VGD++Q+ AAA+L R WR++ E VW++R P P ++ T + G Y YFD Q+W R F+ Sbjct: 249 GSKPYGMVTNIPASMVNNQFGMVGLL--------TFIRAAESDPNLVTLAMGQDLTALGLNLTSIE----NLYPSFGGPFADSPARPQDIDYNVPPEYLINVSIREKLSKVTLQKYKDDLLFYLFYTNVGDLMQIAAAAELHSRDWRYHTEEKVWITRVPGMTPYEKNGTTERGTYYYFDAQNWRRVPKEFQ 428 The following BLAST results are available for this feature:
BLAST of ccr4-not transcription complex subunit 2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of ccr4-not transcription complex subunit 2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 5
BLAST of ccr4-not transcription complex subunit 2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1034_size68570:35479..38153- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1034_size68570-snap-gene-0.16 ID=maker-scaffold1034_size68570-snap-gene-0.16|Name=ccr4-not transcription complex subunit 2|organism=Tigriopus kingsejongensis|type=gene|length=2675bp|location=Sequence derived from alignment at scaffold1034_size68570:35479..38153- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'ccr4-not transcription complex subunit 2' has the following synonyms
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