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Associated RNAi Experiments
Homology
BLAST of transcription factor partial vs. L. salmonis genes
Match: EMLSAG00000001142 (supercontig:LSalAtl2s:LSalAtl2s118:541400:541962:-1 gene:EMLSAG00000001142 transcript:EMLSAT00000001142 description:"maker-LSalAtl2s118-augustus-gene-5.21") HSP 1 Score: 47.3654 bits (111), Expect = 3.424e-7 Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 46 RNLETEFNTLKTLIPGLSERPNLEELDIIDACVSYIQSLRNQLYP 90
+ ++ EF TLK+LIP ++ + + +L+IIDA V YI+ LR +L P
Sbjct: 48 QQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKP 92
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold1041_size68021 | supercontig | scaffold1041_size68021:460..4910 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Note | F:protein dimerization activity |
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1041_size68021:460..4910+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold1041_size68021-snap-gene-0.10 ID=maker-scaffold1041_size68021-snap-gene-0.10|Name=transcription factor partial|organism=Tigriopus kingsejongensis|type=gene|length=4451bp|location=Sequence derived from alignment at scaffold1041_size68021:460..4910+ (Tigriopus kingsejongensis)
CGAGATCTTGAAGAGGCAAGAGGTGATAGTGGTGGTGGAATATCCAATAC
CACAGACCAAAGACTAAAGAGTCCCTTGTATGGACTAACGGAGACTGAAG
GAGTGACACAGGACTATGATTTGTGAGAAGCGAAATATGTCAGACACCAC
CGACCCCCGGGAGGAGGACACCGCAAGTGATGTGCCTATAGACGGGATGC
CCGCCACCAAAATGTCCCGACTCGAGGATCCCATGCCGGAGAGCAGCGAT
CGAAACCTGGAAACCGAATTCAACACCTTGAAAACCCTCATCCCCGGCTT
GTCAGAGAGACCCAACTTGGAAGAGGTATGACCCAGCACAGGCTTTGTAG
CTTCTAGATTGGCAAACGTTTGAGCACGTTCATGTTTTCTGTTTGCAGCT
GGACATCATTGATGCCTGCGTCAGCTACATCCAGTCCCTCAGGAATCAGC
TGTACCCAAGATCACGGCACACTAGTGCGGCTCGGACCGAGCCGGAGAAG
TCTTCGGAATCCTCTTCCGCCGACTCCGACTCTGATACCCAGCCTCAATT
GGAGGGCATGGTGGCGGTAATCGAGGCATCCTCCCCACAGACTGTACTCT
TAAAGTCCCTCAACGACTTGTCAGACTCGGAAAATAAGGAAAACGCTGGA
TAACGTGCCAACTCCTCCGTGATTGTGTCAAATTCAGTGTCATCCTTTTG
GATTTGGCCGCAAAGGCCGTCGAAAATCAATGCAACTGTGATACTAACCC
GCCATGACCACGTCTCCTCTACTTAATTGTTATACATACGTTCCAAGTTT
ATGAACCAACCACGTGTTAATTTCGTCCACATATGGAATGGAAGTTATTA
ATCGTAATAAATATCTCTCAGAAAGTCACCATCATTATTCAAGGCGTCTG
TTCCCTCTACCGTTAGCTTCGAAAGTGCGCACAATGCTCGTCACCCTTCC
TGTTTATGAAATTTTCTCCATTTGAAACAATCCCAATTATCCTCGTCATA
TGTTTGATTCCGACCAAATGACCACAATTAAAGAAGCCACCACCACTTGG
TGTGCCAATATGTTGTTGCACTCAGGGTGCATATGTGTATTCCCAGCATA
AGCATTGACTGCAAGTCAAACTATCACCATATGGTGATCCACTTCTGAGA
GTAGTATCCCCACTTTCGCCACTATTTATTTCCGCAAAAGAACTAACTTT
GTTCCAAGCGATAAACTGAGACAAATATGAGAGCCAAGAGCAAGGCATCC
AGCAGGACTGAGACTCGATCTGATTGCAGAGCAGATGGATATGTGTTTGG
TGGAATGTATTCCCGACATATTAAAATAGACGACATTAAGGCCCGGGAGC
CAACACTTAGCAAACAAGTCCTGGTCAAGAGTATTGGGGCGTATTGTATA
AAACCTAAACAAGCAAAGTTATACTGTATACAATTGAGGCTGTCAAACAG
CCGGATCATGGATAATGAAAACTACATGCCAAAGCAGCACTGAACTGAAA
ATTACTGCCACAGTGAAATTAACCGAATCAAAATACAAAAACGGTGCACG
TGGGGATGAAGTTAGAAATCGGGTATACATACATGGACAGATCAGGTGAT
CACAAAAGAGTACTAGAGTTAAATTCGCCGAATCCAATTAACAACGATTG
GATGTTCAAAAAGATTCCAATCGATCAATTAAGTTTATAAAATAAGCTAA
AATAAAGCAATATAGAATAAGAACAATCTCATTCAACGACTTTGTCATGC
ACGCAAATTGGTGCGTATTCACACAATCTCATTAAGCTCGGTAAAAAAGT
ATTCAAATTGCAGTTCTCTTTTCTACTAGGTACTCACCGATACAAAGTTT
TGAATGGCAGGTAAAAGGGAATATTGGTCCTTAAATCAACAAAAAAAAAC
TAAATTTGGACGTAAGACTTTCTCGATTCCTCAATAACTTGACACTTGCA
AATAACCTGTAACCGTGACCAGCAACAGCTATGTTAGTTAAGCACTTACT
TAGATCATAAAAGCTTGTGCCTGTGTATTCTGCTTAGGTGAGCGTGCTCG
CTCAAAGCACAGCCGTTGGAATAAAACATGACTTGTATGCAGACTGTTGT
ACTACATCGGTTTGAGTGGAAAGTATTTGGTTAGATTCCGAATCGGAAAT
GATCTCCTTCTGGAGCTGTTAAAATAACAAAATACTTTACACTCACGATG
AAAGACGCAATCCCCTGATTGTTTGCCGCGTTCAAATGTCCACTAGTAAT
TCAGGCTTTGCCGATTCGGTGCAAATCAAACCAAGCCCGACTCAATTCTA
GCTTGAAGCGGGCTTAGCGAATGTGCGGCAATCGTCACTCCCTAAGTGGA
TCTGACGTCCACAAGGACCTGCATTTACTCTTTGATCGTCGAGACAGCAT
TGACTACGGTTTAACACATTTGTGGTACATCGAGAATTGGCCCCCGATGC
GGACAATGGGGCTGTGTGCTTGCATTTGAGTCTGAGACAGTCTGAAAAGG
GACGCTGGTCTCCATTTTGTTAACCCCCATATTTCTGGATCACGTTTACC
CACCCAATAGTTCAAGTTGGCGCTGAGAGATGATTTTAGGAGCGTATTCA
GATGCAGCCATGCACGGATGCATAGGAGCGAACAGGTGGAAGCCAGTATT
GCTTGGTCTCCAATGCATCAATCTGTGATGATTTTTTCCCCAACCACTGT
CCTTACCTGCCACTTACAGCCAAGCCCCGAAAGCTTTTTTCCTCGTTATG
ACATGGATAGGAAGAACGGGTGTTTACGCTTGAAGAGTCAATCACTCTAG
AAACCAACCTCTTGGGCGCCAAATCGAACATCCGTATCCAGGTGCAATCT
GGTTGGCTTCAGGGTTTCTTAGTACCACCCATGAATATGCGTTATTAGGT
TCGTGCTTTTAACTTAGTACGCAATTGAGACGTTACTTGGTGGGATGGAC
GAAGGCGTGGGCATCCTTCCCACTCGGAGATAATAAACTATGTTATTACA
ATTGCAATCTTCTCTTGCAGCATATTTCAAATGGCTCAAAGATCCACACA
TTTCCAAGGACTTGGGGCCCATAAAGCGTGTCACTTGGTGCTTAAGTGCC
TCTGTCAATTGTTCGATCGTAATCACGAGCGTTTAATCGATTGTACTGCC
AGAGCAAACACGTCAGACTAATCTTCGGTATGCTATATTTGAAGTAAATG
TATGCACCCACGAAACGAATTTGGTCGTCTCAATCCCACCTTTGGGTCAC
AAAGACTTGACCAAAACGAAGAACGAGACTTATGCTTATGTAACTCAGAC
TGATGGGAAAATCCCCCCACTGATATGGACATCACTCATTAAGGGAGAAG
AATCGATTGTGTACACCCCAGCCTAGTTTTACTAGAATGTACTGTAGGTT
CACATACGGCTCACAAACGCCATAATCCATAGGCATCAGAGCCTGGGTTT
TGGGCCACCAAGAGAGAATTACTCGTTGTACTGGACATGTGGACCTTGAG
TAGTCTGGCGGAGATCGCTCGTTCATGCATTTGCATTATAATTATTGATT
GGGTTTCACCAATCAAATCTCATTATTTGGCCTCTTCAACGTAGTAAAAT
CTGGTGGACAGCAACTAACTTGGCAAGCCTCAAACCAAAGCAGCTGGCGT
TTTGCTCTTCCGGTATTCCGCCGAGAAACAAGTTAGCCAGAGGGAAAACG
GGGGAAGTGATTCGCAGAACTACATACGACGTTTACATCGCTAACAAACA
TACAGTAGATCTCAAAATAGCAGGAATTGGGTTCTTGGTCCCTGGAGTGT
TGCAAACCTCAATTCCTAGCCAAAAGAGATCCACATGATCTGTTTTCTCG
CCATTTATAAGATTGAATGCGAATGTTCTTGAAAATTAAATTTGCAAGGT
CCTTTAGAATCCGCACAACTCAGTTGCACATAGATGCACCTCCCTGTCTG
ATGATTATGATTGCTTTGGCCTCAATGTGCTAACTGCCCCGTTTGGTGCG
GCTTCGAGTATGTGCACTGCAGATGGTGTATACAATTTAGTGATATGATT
TCCAAGAACTTTGATTTGCCCCAATTCACTATCAGGTATGGGGTGGTGGC
TTGTGGCCTTCCTGCCCCACCCACATATCTGGTGGGGTGACAGGAACGCT
AATCGCAGTCAATGGAGCTTTCTTCACCTCTGTAGTAGAGATTCCAGGAT
CAAAACCGGCGAGCCCTTACAGCCTCATCACGGCCCGTACCTTCACCAGT
GGGGATGATGTGTACTTAGAATTTGTCGGATATTCAATTAAAGTGCTCGA
GAACCCCGTGCTCTTGGCCTATTTGCTCATCCCGACAATCTTAGTTCGCG
TAGGTTGGGATTGGTGTGCTGTGACGCGACTGGAATGGCCCGAAGATCGT
GCAAGCGGCAGTGAGGACCCGGCCACCGACGAGGGAATAGTCCTGGAGTG
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Synonyms
The feature 'transcription factor partial' has the following synonyms
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