transposase, maker-scaffold105_size367834-snap-gene-2.30 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of transposase vs. L. salmonis genes
Match: EMLSAG00000008303 (supercontig:LSalAtl2s:LSalAtl2s503:210067:213886:1 gene:EMLSAG00000008303 transcript:EMLSAT00000008303 description:"snap_masked-LSalAtl2s503-processed-gene-2.8") HSP 1 Score: 55.4546 bits (132), Expect = 3.316e-9 Identity = 40/159 (25.16%), Postives = 76/159 (47.80%), Query Frame = 0 Query: 3 VFDIRRRFREHGTTTRKSGQGRKRSVRTKAIIAAVQSRIKRNPVRTIRGIANSMGIAKTTIERVVKEDIGAKSRARRKKHLINQNTKAKRLARSKVLLNFMK-NGPPVILYLDEKLFRVARVSNSQTDSPIEVQPWKAGLLLGTALYLSTSSLTMITSS 160 V+ I + G K+ R +RT + ++ IK +P ++ + + G++K + + V ED+G +S K+H++ + KA RLA LLN ++ +G +I + DEK + R N + D + + + + T S +L +I S+ Sbjct: 19 VYRIFNAWEIKGKFCCKAHSMRSDRIRTFRFLEGLRKSIKASPGTSLSRLVKNXGVSKQLVSKAVNEDLGYRSYRMVKQHILTASMKATRLANGMRLLNDLESHGGRIIFFSDEKNWTFNRSYNVRNDKWLAKEKEEVPAVFITKFPASVMTLGVICST 177
BLAST of transposase vs. L. salmonis genes
Match: EMLSAG00000007738 (supercontig:LSalAtl2s:LSalAtl2s44:1499302:1502018:-1 gene:EMLSAG00000007738 transcript:EMLSAT00000007738 description:"snap-LSalAtl2s44-processed-gene-14.82") HSP 1 Score: 52.7582 bits (125), Expect = 2.171e-8 Identity = 32/104 (30.77%), Postives = 60/104 (57.69%), Query Frame = 0 Query: 2 AVFDIRRRFREHGTTTRKSGQGRKRSVRTKAII-AAVQSRIKRNPVRTIRGIANSMGIAKTTIERVVKEDIGAKSRARRKKHLINQNTKAKRLARSKVLLNFMK 104 +++ ++ + E + + GR +SVRT+++I ++V+++I N I + + + +T + VVK+D+G KSR K + + KRL RSK+LLN +K Sbjct: 47 TLYNTKKIYNETESFVDRDRSGRPKSVRTESLIRSSVKAKIDTNFCDNIWQMVRDLRVHETAVWYVVKKDLGLKSRGVTKVQGLTALQRPKRLERSKILLNKLK 150
BLAST of transposase vs. L. salmonis genes
Match: EMLSAG00000012106 (supercontig:LSalAtl2s:LSalAtl2s868:259044:273007:1 gene:EMLSAG00000012106 transcript:EMLSAT00000012106 description:"augustus-LSalAtl2s868-processed-gene-1.7") HSP 1 Score: 50.447 bits (119), Expect = 1.558e-7 Identity = 26/96 (27.08%), Postives = 49/96 (51.04%), Query Frame = 0 Query: 3 VFDIRRRFREHGTTTRKSGQGRKRSVRTKAIIAAVQSRIKRNPVRTIRGIANSMGIAKTTIERVVKEDIGAKSRARRKKHLINQNTKAKRLARSKV 98 VF + + ++K+G GR + I++ ++ +IK NP +++ + N+ +A TI + VK D+G S R +HL+ + K +KV Sbjct: 35 VFKVANMKKNGEYLSKKAGSGRXNLKKDLEILSNLEKKIKDNPTKSMNHLVNNFFVAARTIRKAVKGDLGFFSYTRTPRHLLTKKKSNKTFFNTKV 130
BLAST of transposase vs. nr
Match: gi|1273516515|gb|PIC20539.1| (hypothetical protein B9Z55_025705 [Caenorhabditis nigoni]) HSP 1 Score: 75.485 bits (184), Expect = 1.314e-12 Identity = 44/127 (34.65%), Postives = 78/127 (61.42%), Query Frame = 0 Query: 2 AVFDIRRRFREHGTTTRKSGQGRKRSVRTKAIIAAVQSRIKRNPVRTIRGIANSMGIAKTTIERVVKEDIGAKSRARRKKHLINQNTKAKRLARSKVLLNFMKNGPPVI-LYLDEKLFRVARVSNSQ 127 V+ +RF E GT + + G+GRK +V T + A++ RI+R+P R+IR +A MG+++ I+++V++ + K K ++++ K KRL ++K LL+ + G ++ ++ DEKLF V NSQ Sbjct: 34 VVYRTIKRFTEIGTLSDRIGRGRKPTVTTPEKVKAIRERIRRDPHRSIRKLATDMGMSRVLIQKIVRKKLNLKCYRVTKAAILSERNKQKRLEKAKFLLSGTRRGDHLVTVFSDEKLFTVEAECNSQ 160
BLAST of transposase vs. nr
Match: gi|597891197|gb|EYC39473.1| (hypothetical protein Y032_0655g1201 [Ancylostoma ceylanicum]) HSP 1 Score: 77.411 bits (189), Expect = 1.796e-12 Identity = 42/128 (32.81%), Postives = 76/128 (59.38%), Query Frame = 0 Query: 3 VFDIRRRFREHGTTTRKSGQGRKRSVRTKAIIAAVQSRIKRNPVRTIRGIANSMGIAKTTIERVVKEDIGAKSRARRKKHLINQNTKAKRLARSKVLLNFMKNG-PPVILYLDEKLFRVARVSNSQTD 129 V+ + ++ GT + GR R+V TK+ I V+ +++RNP R++R + MGI+++++ R+VK+ + K+ R K H + ++ K KR R + LL ++ G +I++ DEK+F V + N Q D Sbjct: 35 VYKTIKWYKTLGTENDRPRPGRPRTVATKSNIKKVRDKVRRNPARSVRRFSKEMGISRSSMMRIVKDYLKLKAYKRNKCHFLTEDAKKKRKDRCQKLLRRIQGGLHRLIVFTDEKVFTVEQAFNKQND 162
BLAST of transposase vs. nr
Match: gi|308473717|ref|XP_003099082.1| (hypothetical protein CRE_27721 [Caenorhabditis remanei] >gi|308267736|gb|EFP11689.1| hypothetical protein CRE_27721 [Caenorhabditis remanei]) HSP 1 Score: 77.411 bits (189), Expect = 1.825e-12 Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 0 Query: 3 VFDIRRRFREHGTTTRKSGQGRKRSVRTKAIIAAVQSRIKRNPVRTIRGIANSMGIAKTTIERVVKEDIGAKSRARRKKHLINQNTKAKRLARSKVLLNFMKNGPPVI-LYLDEKLFRVARVSNSQ 127 V+D RF++ GT + G+GRK +V T I AV+ RI+RN R+IR +A M I++ ++ R+VK+ + RK ++++ T KRL RSK LL +NG ++ ++ DEKLF V N Q Sbjct: 35 VYDSISRFKKLGTFLDRCGRGRKPTVVTPDRIKAVKERIRRNAHRSIRKMAEGMKISRRSLGRIVKDKLKLTCYRVRKAAILSEATTKKRLERSKKLLQRTRNGEHLVTVFSDEKLFTVQAEFNPQ 160
BLAST of transposase vs. nr
Match: gi|308459594|ref|XP_003092114.1| (hypothetical protein CRE_22126 [Caenorhabditis remanei] >gi|308254333|gb|EFO98285.1| hypothetical protein CRE_22126 [Caenorhabditis remanei]) HSP 1 Score: 76.6406 bits (187), Expect = 3.932e-12 Identity = 48/120 (40.00%), Postives = 72/120 (60.00%), Query Frame = 0 Query: 9 RFREHGTTTRKSGQGRKRSVRTKAIIAAVQSRIKRNPVRTIRGIANSMGIAKTTIERVVKEDIGAKSRARRKKHLINQNTKAKRLARSKVLLNFMKNGPPVI-LYLDEKLFRVARVSNSQ 127 RF++ GT + G+GRK +V T I AV+ RI+RNP R+IR +A M I+ ++ R+VK+ + RK ++++ T KRL RSK LL +NG ++ ++ DEKLF V N Q Sbjct: 73 RFKKLGTFLDRCGRGRKPTVVTPDRIKAVKERIRRNPHRSIRKMAKGMKISSRSMGRIVKDKLKLTCYRVRKAAILSEATTKKRLERSKKLLQRTRNGEHLVTVFSDEKLFTVQAEFNPQ 192
BLAST of transposase vs. nr
Match: gi|748389112|gb|KIH61125.1| (hypothetical protein ANCDUO_08608 [Ancylostoma duodenale]) HSP 1 Score: 75.0998 bits (183), Expect = 6.175e-12 Identity = 46/129 (35.66%), Postives = 77/129 (59.69%), Query Frame = 0 Query: 3 VFDIRRRFREHGTTTRKSGQGRKRSVRTKAIIAAVQSRIKRNPVRTIRGIANSMGIAKTTIERVVKEDIGAKSRARRKKHLINQNTKAKRLARSKVLLNFMKNG--PPVILYLDEKLFRVARVSNSQTD 129 V+ +R+ G++ ++ G GR+R+ R A I ++ R++RNP ++ R + S GI+++T+ R+VKED+G K RK ++ K RL RS+ LL NG ++L+ DEK+F V +V N + D Sbjct: 35 VYRAIKRYLGTGSSKKRHGGGRRRTARIAANIGRLRKRLQRNPRQSSRKSSKSTGISRSTVMRIVKEDLGLKPFKLRKVQELSSAQKGNRLTRSRALLKRPANGELENMVLFSDEKIFTVEQVLNRKND 163 The following BLAST results are available for this feature:
BLAST of transposase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 3
BLAST of transposase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of transposase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold105_size367834:228665..237828+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold105_size367834-snap-gene-2.30 ID=maker-scaffold105_size367834-snap-gene-2.30|Name=transposase|organism=Tigriopus kingsejongensis|type=gene|length=9164bp|location=Sequence derived from alignment at scaffold105_size367834:228665..237828+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'transposase' has the following synonyms
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