39s ribosomal protein mitochondrial precursor, maker-scaffold119_size336447-snap-gene-2.35 (gene) Tigriopus kingsejongensis

Overview
Name39s ribosomal protein mitochondrial precursor
Unique Namemaker-scaffold119_size336447-snap-gene-2.35
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of 39s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Match: EMLSAG00000002981 (supercontig:LSalAtl2s:LSalAtl2s170:188446:188814:1 gene:EMLSAG00000002981 transcript:EMLSAT00000002981 description:"augustus_masked-LSalAtl2s170-processed-gene-2.1")

HSP 1 Score: 56.9954 bits (136), Expect = 2.780e-11
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 0
Query:  102 MCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTV 172
            M R+FG+K WG  K   MN ++++D+ TGE+F+LG L   T++ I +ET  IQ ++K  FG   K   + V
Sbjct:    1 MTRRFGSKQWGTCKLVPMNYRIQVDNNTGEFFQLGELAPRTFRYIMNETEIIQSKVKNIFGKGAKDADVLV 71          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|225711406|gb|ACO11549.1| (39S ribosomal protein L32, mitochondrial precursor [Caligus rogercresseyi])

HSP 1 Score: 86.2705 bits (212), Expect = 4.289e-18
Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = 0
Query:   57 LNPACLGPNVDPVPSP-TRSAHTDPLTEGFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTV 172
            L P  LG     V SP  R    D       IL AVPK RR+  +RM R+FG+K WG  K   MN ++R+D+KTGE+F LG L   T++ + DET +IQ+++K+ FG +PK   + V
Sbjct:   23 LRPELLG-----VASPLARQTPNDSSEISESILWAVPKKRRSLEKRMTRRFGSKHWGTSKLVPMNHRIRVDNKTGEFFVLGQLAPRTFRAVMDETQSIQKKVKDLFGKEPKNAEVGV 134          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1325314020|ref|XP_023338684.1| (39S ribosomal protein L32, mitochondrial-like [Eurytemora affinis])

HSP 1 Score: 85.8853 bits (211), Expect = 1.022e-17
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   86 GILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGF-QPKPVGLTVL 173
             IL   P+ RR   +R  R+FG+  WG YK P +N+K+R+DHKTGEYF LG L   TY +I +ET AIQ++M+E+FG   PK   + VL
Sbjct:   50 SILWNTPRRRRCLEKRQTRRFGSLEWGTYKLPRINQKIRVDHKTGEYFELGKLAPLTYTRIMEETKAIQKKMQETFGTGTPKDQDVVVL 138          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|225711300|gb|ACO11496.1| (39S ribosomal protein L32, mitochondrial precursor [Caligus rogercresseyi])

HSP 1 Score: 85.5001 bits (210), Expect = 1.182e-17
Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = 0
Query:   57 LNPACLGPNVDPVPSP-TRSAHTDPLTEGFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTV 172
            L P  LG     V SP  R    D       IL AVPK RR+  +RM R+FG+K WG  K   MN ++R+D+KTGE+F LG L   T++ + DET +IQ+++K+ FG +PK   + V
Sbjct:   23 LRPEFLG-----VASPLARQTPNDSSEISESILWAVPKKRRSLEKRMTRRFGSKHWGTSKLVPMNHRIRVDNKTGEFFVLGQLAPRTFRAVMDETQSIQKKVKDLFGKEPKNAEVGV 134          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|225709356|gb|ACO10524.1| (39S ribosomal protein L32, mitochondrial precursor [Caligus rogercresseyi])

HSP 1 Score: 84.3445 bits (207), Expect = 4.098e-17
Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = 0
Query:   57 LNPACLGPNVDPVPSP-TRSAHTDPLTEGFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPK 166
            L P  LG     V SP  R    D       IL AVPK RR+  +RM R+FG+K WG  K   MN ++R+D+KTGE+F LG L   T++ + DET +IQ+++K+  G +PK
Sbjct:   23 LRPELLG-----VASPLARQTPNDSSEISESILWAVPKKRRSLEKRMTRRFGSKHWGTSKLVPMNHRIRVDNKTGEFFVLGQLAPRTFRAVMDETQSIQKKVKDLIGKEPK 128          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|290561443|gb|ADD38122.1| (39S ribosomal protein L32, mitochondrial [Lepeophtheirus salmonis])

HSP 1 Score: 70.8626 bits (172), Expect = 6.331e-12
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 0
Query:   49 VQRGRFPPLNP--ACLGPNVDPVPSPTRSAHTDPLTEGFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFG 162
            + R  FPP +P  A   P +   PS   S      +    IL  VPK RR+  +RM R+FG+K WG  K   MN ++++D+ TGE+F+LG L   T++ I +ET  IQ ++K  FG
Sbjct:   17 LSRSFFPP-SPQFALSSPALRYTPS---SCQESSPSLKDSILWGVPKRRRSLEKRMTRRFGSKQWGTCKLVPMNYRIQVDNNTGEFFQLGELAPRTFRYIMNETEIIQSKVKNIFG 128          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|350405494|ref|XP_003487451.1| (39S ribosomal protein L32, mitochondrial [Bombus impatiens])

HSP 1 Score: 61.2326 bits (147), Expect = 2.824e-8
Identity = 49/145 (33.79%), Postives = 74/145 (51.03%), Query Frame = 0
Query:   34 YRSFSAIVDDVLWHMVQRGRFPPLN---PACLGPNVDPVPSPTRSAHTDPLTEGFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYP--VMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTVL 173
            +++F+ +VD +L    +RG FP  N     C   NV  +  P RS   D L E   IL AVPK RR+  +R+CR+F   GW +Y +   V    + +  K G  +  G L    Y+ ++ ET  IQ+ +++S G QP    + VL
Sbjct:   22 FKAFNQVVDIIL----RRG-FPSGNLYAIECNAVNVQTINFPGRSIK-DVLNET--ILWAVPKKRRSIEKRLCRRF---GWPEYVWKPHVPKTNILMCKKCGHDYEAGTLCGYCYEIVKKETKEIQKAIQDSLGLQPVEQDVIVL 155          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1080046036|ref|XP_018564249.1| (39S ribosomal protein L32, mitochondrial [Anoplophora glabripennis])

HSP 1 Score: 61.2326 bits (147), Expect = 2.860e-8
Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 0
Query:   53 RFPPLNPACLGPNVDPVPSPTRSAHTDPLTEGFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRK--LRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTVL 173
            R+PP      G  VD  P P R +  D L +GF  L AVPK+RR+  +R+ RKFG      Y   +M  K  LR  +  G+    G+L    Y+K+ DET A+QE ++E    +P    + VL
Sbjct:   27 RYPPGAFCLAGTAVDRFPQPPRFSLKDVLGDGF--LWAVPKHRRSIEKRLKRKFGH---PDYVLKIMKPKTNLRTCNVCGDDHEAGVLCPTCYKKVMDETKAMQEAIQEELKLEPVEKEVVVL 144          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|907596280|ref|XP_013118644.1| (PREDICTED: 39S ribosomal protein L32, mitochondrial [Stomoxys calcitrans])

HSP 1 Score: 60.8474 bits (146), Expect = 3.318e-8
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 0
Query:   26 IGRQITQCYRSFSAIVDDVLWHMVQRGRFPPLNPACLGPNVDP----VPSPTRSAHTDPLTEGFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTVL 173
            + R +   + +F   ++ VL  + Q+G  PP       P+V        +PTRS        G GIL AVPK+RR   +R+ RKFG   +  +K   +   LR  ++ G  +  G L    Y K+R+ET  +Q++++E  G QP    + VL
Sbjct:    1 MSRNLVLYFSNFLQRLESVLPALFQQGSLPPAFALAGLPSVHEKIRNQNTPTRSLKD---IIGDGILWAVPKHRRTLEKRLNRKFGYPEYN-WKPLRVKTNLRSCNQCGHDYEAGHLCPHCYNKVREETQQMQDKIQEELGLQPVEQEVVVL 148          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1098672910|ref|XP_018797284.1| (PREDICTED: 39S ribosomal protein L32, mitochondrial [Bactrocera latifrons])

HSP 1 Score: 59.3066 bits (142), Expect = 1.438e-7
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 0
Query:   26 IGRQITQCYRSFSAIVDDVLWHMVQRGRFPPLNPACLG-PNVDPVPSPTRSAHTDPLTE-GFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTVL 173
            + R I Q   SF   ++  ++   +RG+ PPL  A +G P+V+ + +P +S         G GIL AVPK+RR   +R+ RKFG  G+  +K  V    LR  ++ G    LG+L    Y+K+  ET  +QE++++  G +P    + VL
Sbjct:    1 MSRTIYQSLNSFLNRLERFIF-FGRRGQ-PPLELALVGMPSVE-LNAPNKSDRFSLKNLLGDGILWAVPKHRRTIEKRLNRKFGLPGYN-WKPLVAKTNLRSCNQCGHDHELGVLCPHCYKKVEQETRLMQEKIQQKLGLEPIEHEVVVL 146          
BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|751788229|ref|XP_011203565.1| (PREDICTED: 39S ribosomal protein L32, mitochondrial [Bactrocera dorsalis])

HSP 1 Score: 58.5362 bits (140), Expect = 2.319e-7
Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 0
Query:   26 IGRQITQCYRSFSAIVDDVLWHMVQRGRFPPLNPACLGPNVDPVPSPTRSAHTDPLTE-GFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTVL 173
            + R I Q   SF   ++  ++    RG+ PPL  A +G     + +P +S         G GIL AVPK+RR   +R+ RKFG  G+  +K  V    LR  ++ G    LG+L    Y+K+  ET  +QE++++  G +P    + VL
Sbjct:    1 MSRNIYQSLNSFLNRLERFIF-FGHRGQ-PPLELALVGMPSVGLNAPNKSDRFSLKNLLGDGILWAVPKHRRTIEKRLNRKFGLPGYN-WKPLVAKTNLRSCNQCGHDHELGVLCPHCYKKVEQETRLMQEKIEQKLGLEPIEHEVVVL 146          
The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000029812.780e-1140.85supercontig:LSalAtl2s:LSalAtl2s170:188446:188814:1... [more]
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BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 11
Match NameE-valueIdentityDescription
gi|225711406|gb|ACO11549.1|4.289e-1842.7439S ribosomal protein L32, mitochondrial precursor... [more]
gi|1325314020|ref|XP_023338684.1|1.022e-1749.4439S ribosomal protein L32, mitochondrial-like [Eur... [more]
gi|225711300|gb|ACO11496.1|1.182e-1742.7439S ribosomal protein L32, mitochondrial precursor... [more]
gi|225709356|gb|ACO10524.1|4.098e-1743.2439S ribosomal protein L32, mitochondrial precursor... [more]
gi|290561443|gb|ADD38122.1|6.331e-1238.7939S ribosomal protein L32, mitochondrial [Lepeopht... [more]
gi|350405494|ref|XP_003487451.1|2.824e-833.7939S ribosomal protein L32, mitochondrial [Bombus i... [more]
gi|1080046036|ref|XP_018564249.1|2.860e-836.5939S ribosomal protein L32, mitochondrial [Anoploph... [more]
gi|907596280|ref|XP_013118644.1|3.318e-830.92PREDICTED: 39S ribosomal protein L32, mitochondria... [more]
gi|1098672910|ref|XP_018797284.1|1.438e-733.33PREDICTED: 39S ribosomal protein L32, mitochondria... [more]
gi|751788229|ref|XP_011203565.1|2.319e-732.21PREDICTED: 39S ribosomal protein L32, mitochondria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold119_size336447supercontigscaffold119_size336447:271253..271923 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold119_size336447-snap-gene-2.35-mRNA-1maker-scaffold119_size336447-snap-gene-2.35-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold119_size336447:271253..271923-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold119_size336447-snap-gene-2.35 ID=maker-scaffold119_size336447-snap-gene-2.35|Name=39s ribosomal protein mitochondrial precursor|organism=Tigriopus kingsejongensis|type=gene|length=671bp|location=Sequence derived from alignment at scaffold119_size336447:271253..271923- (Tigriopus kingsejongensis)
ATGGGTCAACAAAAGTTCGTCAGAGGCTCGTTGCTCCACGGTGCTCTGGG AATTGGAGTTGGGATTGTAATGTGAGGTCGGCAATCGACGGATTTAGTGT ACCCATTACCGGCTTCAGGATGATTGGCAGACAAATCACGCAGTGCTATC GCTCGTTTTCGGCCATCGTGGACGATGTACTGTGGCACATGGTCCAAAGG GGTCGCTTTCCACCCCTGAATCCCGCCTGTCTGGGCCCCAATGTGGATCC AGTCCCCAGTCCCACCAGGTTCGTAGAACACCACTGAGAGCTCTCAGTCA ATCTGAGCACGGCTGAGCATGGGAGATAGGCTAATGCGGCTGGGGTTCAT TCCAGGTCTGCCCACACGGACCCCCTGACGGAGGGCTTTGGGATTCTGAA TGCCGTGCCCAAAAACCGACGGAACTGGACCCGGCGGATGTGTCGTAAAT TCGGGGCCAAGGGATGGGGTCAGTACAAGTATCCCGTGATGAACCGAAAA CTTCGATTAGACCACAAGACGGGCGAATACTTCCGATTGGGTCTCCTGCC CATGGGCACGTACCAGAAGATCCGGGACGAGACCCTGGCCATCCAGGAGC GCATGAAGGAGAGCTTCGGCTTCCAGCCCAAGCCAGTCGGCCTTACCGTG CTGGTATCGCCCGGAGTCTGA
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Synonyms
The feature '39s ribosomal protein mitochondrial precursor' has the following synonyms
Synonym
Tk11790
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