39s ribosomal protein mitochondrial precursor, maker-scaffold119_size336447-snap-gene-2.35 (gene) Tigriopus kingsejongensis

Overview
Name39s ribosomal protein mitochondrial precursor
Unique Namemaker-scaffold119_size336447-snap-gene-2.35
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of 39s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Match: EMLSAG00000002981 (supercontig:LSalAtl2s:LSalAtl2s170:188446:188814:1 gene:EMLSAG00000002981 transcript:EMLSAT00000002981 description:"augustus_masked-LSalAtl2s170-processed-gene-2.1")

HSP 1 Score: 56.9954 bits (136), Expect = 2.780e-11
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 0 
Query:  102 MCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTV 172
            M R+FG+K WG  K   MN ++++D+ TGE+F+LG L   T++ I +ET  IQ ++K  FG   K   + V
Sbjct:    1 MTRRFGSKQWGTCKLVPMNYRIQVDNNTGEFFQLGELAPRTFRYIMNETEIIQSKVKNIFGKGAKDADVLV 71
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BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Match: gi|929365896|ref|XP_014092616.1| (PREDICTED: 39S ribosomal protein L32, mitochondrial [Bactrocera oleae])

HSP 1 Score: 57.7658 bits (138), Expect = 5.035e-7
Identity = 49/151 (32.45%), Postives = 75/151 (49.67%), Query Frame = 0 
Query:   26 IGRQITQCYRSFSAIVDDVLWHMVQRGRFPPLNPACLG-PNVDPVPSPTRSAHTDPLTE--GFGILNAVPKNRRNWTRRMCRKFGAKGWGQYKYPVMNRKLRLDHKTGEYFRLGLLPMGTYQKIRDETLAIQERMKESFGFQPKPVGLTVL 173
            + R I Q   SF   ++  ++    RG+ PP+  A  G P+V       R +    L    G GIL AVPK+RR   +R+ RKFG  G+  +K  V    LR  ++ G    LG+L    Y+K+  ET  +QE++++  G +P    + VL
Sbjct:    1 MSRNIYQSLNSFLNRLERFIF-FGHRGQ-PPMELALAGMPSVGLNAPDIRKSDRFSLKNLLGDGILWAVPKHRRTIEKRLNRKFGLPGYN-WKPLVAKTNLRSCNQCGHDHELGVLCPHCYKKVEQETRLMQEKIEQKLGLEPIEHEVVVL 148
The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000029812.780e-1140.85supercontig:LSalAtl2s:LSalAtl2s170:188446:188814:1... [more]
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BLAST of 39s ribosomal protein mitochondrial precursor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 39s ribosomal protein mitochondrial precursor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 11
Match NameE-valueIdentityDescription
gi|929365896|ref|XP_014092616.1|5.035e-732.45PREDICTED: 39S ribosomal protein L32, mitochondria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold119_size336447supercontigscaffold119_size336447:271253..271923 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold119_size336447-snap-gene-2.35-mRNA-1maker-scaffold119_size336447-snap-gene-2.35-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold119_size336447:271253..271923-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold119_size336447-snap-gene-2.35 ID=maker-scaffold119_size336447-snap-gene-2.35|Name=39s ribosomal protein mitochondrial precursor|organism=Tigriopus kingsejongensis|type=gene|length=671bp|location=Sequence derived from alignment at scaffold119_size336447:271253..271923- (Tigriopus kingsejongensis)
ATGGGTCAACAAAAGTTCGTCAGAGGCTCGTTGCTCCACGGTGCTCTGGG
AATTGGAGTTGGGATTGTAATGTGAGGTCGGCAATCGACGGATTTAGTGT
ACCCATTACCGGCTTCAGGATGATTGGCAGACAAATCACGCAGTGCTATC
GCTCGTTTTCGGCCATCGTGGACGATGTACTGTGGCACATGGTCCAAAGG
GGTCGCTTTCCACCCCTGAATCCCGCCTGTCTGGGCCCCAATGTGGATCC
AGTCCCCAGTCCCACCAGGTTCGTAGAACACCACTGAGAGCTCTCAGTCA
ATCTGAGCACGGCTGAGCATGGGAGATAGGCTAATGCGGCTGGGGTTCAT
TCCAGGTCTGCCCACACGGACCCCCTGACGGAGGGCTTTGGGATTCTGAA
TGCCGTGCCCAAAAACCGACGGAACTGGACCCGGCGGATGTGTCGTAAAT
TCGGGGCCAAGGGATGGGGTCAGTACAAGTATCCCGTGATGAACCGAAAA
CTTCGATTAGACCACAAGACGGGCGAATACTTCCGATTGGGTCTCCTGCC
CATGGGCACGTACCAGAAGATCCGGGACGAGACCCTGGCCATCCAGGAGC
GCATGAAGGAGAGCTTCGGCTTCCAGCCCAAGCCAGTCGGCCTTACCGTG
CTGGTATCGCCCGGAGTCTGA
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Synonyms
The feature '39s ribosomal protein mitochondrial precursor' has the following synonyms
Synonym
Tk11790
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